PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_7540V3.1.p

Common Name

PHYPADRAFT_90199

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

SBP

Protein Properties

Length: 678aa MW: 72761 Da PI: 7.612

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_7540V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.4e-41	222	299	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+ dls ak yhrrhkvCe hskap+v++ g++qrfCqqCsrfh+l efD++krsCr+rLa+hn+rrrk+q+ Pp3c16_7540V3.1.p 222 MCQAEGCKFDLSLAKPYHRRHKVCELHSKAPNVIAGGQTQRFCQQCSRFHSLGEFDDGKRSCRKRLADHNRRRRKPQS 299 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-34	216	284	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.718	220	297	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-38	221	301	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-31	223	296	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MNPSANTNEQ QGGHSWSTEN WDNPGAVVTL DQATSQYSSA NRLEWEWDPM ILAQHPGNDI 60 TSTDGGDGDR MKNQISTGTM SSLRASYNIN MLPAGLPSNF TQNHMGIYSS AGIRSFGSLD 120 GSAQLPATSN LHNVLGPSGI PGLAATSGAG LDNDIRSYDQ RRREFFAVGM HDHHVKREEV 180 NDGHARIGLN LGVRTYFSTE ETATNRLGKR HRAGSPGSIA PMCQAEGCKF DLSLAKPYHR 240 RHKVCELHSK APNVIAGGQT QRFCQQCSRF HSLGEFDDGK RSCRKRLADH NRRRRKPQSN 300 TATPGGTTAE STGLKGGEND IPGCNRNNAS KSMIMSQKSK SSPSSVSLDD SDDQKPGSVG 360 NNLQLRSSGQ GYGRRLGDDL HQSHSGMQMS SQSLAGSESQ ALLSAMSPVP LMLQNAKRQM 420 SMMSGANNHG QDHSLYQHLQ GVSAGQTGPK LSLSFLGGQM GRSQTMSSQT YNGMEPPLSW 480 LRPLNPRSEL TQVVGRQGTI NHQHLMSTDS KSGITSASAN SSNSQEHDAQ VFSPSSQNLI 540 PRDIASPEWM LGSMAGQTPR TESNHFGNSS LNNLTGNGQL ESGHPVMSLI DSPKEGDGGS 600 NQAGQRGHTP VEFMQQHNTG ADSGGDNNSR GGGSTVDSPD MKYPELQALR PYGGGPPSIY 660 ESHNNLMPGN FLYETMA*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MNPSANTNEQ QGGHSWSTEN WDNPGAVVTL DQATSQYSSA NRLEWEWDPM ILAQHPGNDI  60
TSTDGGDGDR MKNQISTGTM SSLRASYNIN MLPAGLPSNF TQNHMGIYSS AGIRSFGSLD  120
GSAQLPATSN LHNVLGPSGI PGLAATSGAG LDNDIRSYDQ RRREFFAVGM HDHHVKREEV  180
NDGHARIGLN LGVRTYFSTE ETATNRLGKR HRAGSPGSIA PMCQAEGCKF DLSLAKPYHR  240
RHKVCELHSK APNVIAGGQT QRFCQQCSRF HSLGEFDDGK RSCRKRLADH NRRRRKPQSN  300
TATPGGTTAE STGLKGGEND IPGCNRNNAS KSMIMSQKSK SSPSSVSLDD SDDQKPGSVG  360
NNLQLRSSGQ GYGRRLGDDL HQSHSGMQMS SQSLAGSESQ ALLSAMSPVP LMLQNAKRQM  420
SMMSGANNHG QDHSLYQHLQ GVSAGQTGPK LSLSFLGGQM GRSQTMSSQT YNGMEPPLSW  480
LRPLNPRSEL TQVVGRQGTI NHQHLMSTDS KSGITSASAN SSNSQEHDAQ VFSPSSQNLI  540
PRDIASPEWM LGSMAGQTPR TESNHFGNSS LNNLTGNGQL ESGHPVMSLI DSPKEGDGGS  600
NQAGQRGHTP VEFMQQHNTG ADSGGDNNSR GGGSTVDSPD MKYPELQALR PYGGGPPSIY  660
ESHNNLMPGN FLYETMA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	214	296	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	296	KRSCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024399446.1	0.0	uncharacterized protein LOC112293809
Refseq	XP_024399447.1	0.0	uncharacterized protein LOC112293809
Refseq	XP_024399448.1	0.0	uncharacterized protein LOC112293809
TrEMBL	A0A2K1J7L8	0.0	A0A2K1J7L8_PHYPA; Uncharacterized protein
STRING	PP1S194_61V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	6e-48	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Pp3c16_7540V3.1.p
Entrez Gene	5938814

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]