PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_7490V3.2.p | ||||||||
Common Name | PHYPADRAFT_168928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 700aa MW: 73665.2 Da PI: 7.5781 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.1 | 2.3e-42 | 271 | 348 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls +k+yh+rhkvCe+hskap+++++g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+++ Pp3c16_7490V3.2.p 271 RCQVEGCKADLSGCKDYHKRHKVCEMHSKAPKCIAAGIEQRFCQQCSRFHVLTEFDEGKRSCRRRLAGHNERRRKPHP 348 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-34 | 266 | 333 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.137 | 269 | 346 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-39 | 270 | 350 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.2E-31 | 272 | 345 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MSQQYMAMAV NGSHVHSGIS SSGPQAPENC WSSTSWEHQN LTDSSSMEGS GGVDYVGSGR 60 MEWDLKANSW EWENLTMVYP QQGEGNQRLH NNDWPVSAAC SAVTLATTSA GASDFSIGLA 120 SGSSTPSGAL SVSSGIPGVS AGRGSCGADL SSLVKSEPDE NGAERTVLGT PATLNGHKHR 180 LLFDLGGVQS RGNGERSPEK DDNTRAAAVP SNGSSAVSGA GDSLNIGLKL GRRTYFEDST 240 GVGHAKGLSS PAPSPPGKKQ RVVAPSMQIA RCQVEGCKAD LSGCKDYHKR HKVCEMHSKA 300 PKCIAAGIEQ RFCQQCSRFH VLTEFDEGKR SCRRRLAGHN ERRRKPHPET HSVFGLRNSS 360 PLYSDSSTLT MDSAPFYFLD SKRSSILHRH RGSSLDDELH SYSDTLKRTN PWSTLRRDEN 420 SLACQLQAAS AERQSIFSTL SRPTADRLLS LLQNPKSQMP APNTSTGMNL GNHHFLEGPL 480 GPLGQGLSLS SSTGGVLGSL EQSRVGSCSQ SLSSVSGLAN SGRALSLLSS QSWASRPTQG 540 ASAPVSLGLS QADDSTLEQL VASSSDCSNR GSRFSHHLQL PCGGSSTSAQ QQFDKQLSIQ 600 SGGLESVGLN CGLAATGNGN ILSGLGGGYD ETNSILALVQ AGQDIQALNS GSSHHARPTI 660 DLMQMPSSHS NGLHSQVSGS QCSGFNALRP FESSVFSTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 272 | 345 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 403 | 408 | DTLKRT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14808 | 0.0 | sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF016497 | 0.0 | EF016497.1 Physcomitrella patens SBP-domain protein 13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398584.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A9TAE9 | 0.0 | A9TAE9_PHYPA; Predicted protein | ||||
STRING | PP1S194_57V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-44 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_7490V3.2.p |
Entrez Gene | 5938813 |
Publications ? help Back to Top | |||
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