PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_7490V3.1.p
Common NamePHYPADRAFT_168928
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 700aa    MW: 73665.2 Da    PI: 7.5781
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_7490V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.3e-42271348178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC+adls +k+yh+rhkvCe+hskap+++++g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+++
  Pp3c16_7490V3.1.p 271 RCQVEGCKADLSGCKDYHKRHKVCEMHSKAPKCIAAGIEQRFCQQCSRFHVLTEFDEGKRSCRRRLAGHNERRRKPHP 348
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-34266333IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.137269346IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-39270350IPR004333Transcription factor, SBP-box
PfamPF031106.2E-31272345IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MSQQYMAMAV NGSHVHSGIS SSGPQAPENC WSSTSWEHQN LTDSSSMEGS GGVDYVGSGR  60
MEWDLKANSW EWENLTMVYP QQGEGNQRLH NNDWPVSAAC SAVTLATTSA GASDFSIGLA  120
SGSSTPSGAL SVSSGIPGVS AGRGSCGADL SSLVKSEPDE NGAERTVLGT PATLNGHKHR  180
LLFDLGGVQS RGNGERSPEK DDNTRAAAVP SNGSSAVSGA GDSLNIGLKL GRRTYFEDST  240
GVGHAKGLSS PAPSPPGKKQ RVVAPSMQIA RCQVEGCKAD LSGCKDYHKR HKVCEMHSKA  300
PKCIAAGIEQ RFCQQCSRFH VLTEFDEGKR SCRRRLAGHN ERRRKPHPET HSVFGLRNSS  360
PLYSDSSTLT MDSAPFYFLD SKRSSILHRH RGSSLDDELH SYSDTLKRTN PWSTLRRDEN  420
SLACQLQAAS AERQSIFSTL SRPTADRLLS LLQNPKSQMP APNTSTGMNL GNHHFLEGPL  480
GPLGQGLSLS SSTGGVLGSL EQSRVGSCSQ SLSSVSGLAN SGRALSLLSS QSWASRPTQG  540
ASAPVSLGLS QADDSTLEQL VASSSDCSNR GSRFSHHLQL PCGGSSTSAQ QQFDKQLSIQ  600
SGGLESVGLN CGLAATGNGN ILSGLGGGYD ETNSILALVQ AGQDIQALNS GSSHHARPTI  660
DLMQMPSSHS NGLHSQVSGS QCSGFNALRP FESSVFSTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-302723451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403408DTLKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.148080.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164970.0EF016497.1 Physcomitrella patens SBP-domain protein 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398584.10.0squamosa promoter-binding-like protein 12
TrEMBLA9TAE90.0A9TAE9_PHYPA; Predicted protein
STRINGPP1S194_57V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-44squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]