PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_7480V3.1.p
Common NameSBP3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 662aa    MW: 70383.2 Da    PI: 8.0894
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_7480V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40238315178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv+gC+adls +k+yh+rhkvCe+hska++++++g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Pp3c16_7480V3.1.p 238 RCQVQGCDADLSCCKDYHKRHKVCEMHSKAATAIAAGIEQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNQRRRKSQP 315
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-33232300IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445236313IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.11E-37237317IPR004333Transcription factor, SBP-box
PfamPF031109.8E-30239312IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAMALKTNLV HPGVMSGIQV PECWSSTGLE YENLAESWEW EDPITSFPSR LVEGHLRPQS  60
NSWVAAACSA VSLAAVGASK PGEFQHGYIL GSGTHLGTSF SSGISDVAGG RRNCGADFPA  120
LVKNEPDEHK AEQVTVGKPV SLSGRKDGYF FSLRSSPSPK NEDRPAEEDN HTQPCGGQSS  180
GSGLVNGGRD CQKVALKPGR RTHFENSAVV GQVKASLTAF SPPGKKQRAL SPSTQIPRCQ  240
VQGCDADLSC CKDYHKRHKV CEMHSKAATA IAAGIEQRFC QQCSRFHVLK EFDEGKRSCR  300
RRLAGHNQRR RKSQPETRSL FDFSGSFLRR GISTSSIAGS PFYIPEDSKQ SSFLHPHLPS  360
SLEHGLHAYG YNLTRSSPWP LKSRDGSIPA LQLQGSSSPV AAPYPSSGLI LGGYHFLDGP  420
LGSPGQGLSL SSSTGGVLGS LEQSRVGSCS QSLSSVSGLA NSGRALSLLS LQSWASRPTQ  480
GASAPVSLGL SQADDSTLEQ LVASSSDCSN RGSRFSHHLQ LPCGGSSTSA QQQFDKQLSI  540
QSGGLESVGL NCGLAATGYG AHHHQGSGNP NILAGFRGYY ETNSTLSAHN GQDIQTLNSI  600
CASHHAFPTI NLMQLDQPSD QVHQGTPYSH GLYLPVSVGE HRGFTDLRPF ESSMCSSQHL  660
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29231312384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312QRRRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.15950.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9683180.0AJ968318.1 Physcomitrella patens SBP3 gene for squamosa promoter binding protein 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398585.10.0uncharacterized protein LOC112293436 isoform X1
TrEMBLA0A2K1J7J90.0A0A2K1J7J9_PHYPA; Uncharacterized protein
STRINGPP1S194_53V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-38squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Riese M,H
    Comparative analysis of the SBP-box gene families in P. patens and seed plants.
    Gene, 2007. 401(1-2): p. 28-37
    [PMID:17689888]