PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_4710V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 523aa    MW: 56622.6 Da    PI: 8.2679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_4710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18311360356
                AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++ a+++l+g+
  Pp3c16_4710V3.2.p 311 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 360
                        8*******.**********32....25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.509310367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-28310366IPR001471AP2/ERF domain
SMARTSM003802.8E-31310373IPR001471AP2/ERF domain
PRINTSPR003671.9E-9311322IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-20311368IPR016177DNA-binding domain
CDDcd000186.73E-29311366No hitNo description
PfamPF008472.7E-12311359IPR001471AP2/ERF domain
PRINTSPR003671.9E-9333349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MALHDMLKGS GISAKCKWRD VAPEVPRKNT TSDRSRDSRS QNETRTWMAC HRCSGPAFNT  60
LCDRCLSPCA SSMDTLNFLL EGAISFRGGE ICRSNNLPDV SESFGAYNTN FDSGQVEGGD  120
DRQFSPDSPV VDTLGISITP DCSKQQDLDG IAAVVGKSVL FGSTHSLEGR ISRSLDMSLT  180
LAPPSLWKHS FPHALQSRVL NTLPSRTDNT LSLNVESGGS HRADSCTSEQ TRSSPTDFRA  240
TSDHLHNQDI SKLSSQLHEV RRTISIDNDF IGLGSSMGVI VGQPAKSSSG TSTSAKRIAR  300
AEASGATGRS FRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTAEDAARAY DSAARALRGA  360
KAKTNFGVDH SGSKSHIHNA FPSYSRAERT STSSSPQHRS LRLSSSLPLN QYSSGIATVL  420
SVNIGNQTRR ASEVLSNSQP AAVLIRAEIQ ESVPENCAMT MLPNADPKLD FCSPRSCSSR  480
ESTQESTATY QSPEHSDFFS TSGFYSGFSS DLTPIPMSSS WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16305366971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398378.10.0uncharacterized protein LOC112293327
TrEMBLA0A2K1J7650.0A0A2K1J765_PHYPA; Uncharacterized protein
STRINGPP1S15_480V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-20ERF family protein