PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_3770V3.2.p
Common NamePHYPADRAFT_189022
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 301aa    MW: 32780.6 Da    PI: 8.6051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_3770V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-202372255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++ a+++l+g
  Pp3c16_3770V3.2.p 23 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 72
                       69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-312379No hitNo description
Gene3DG3DSA:3.30.730.102.5E-312380IPR001471AP2/ERF domain
PfamPF008472.5E-132372IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212380IPR016177DNA-binding domain
PROSITE profilePS5103222.8132380IPR001471AP2/ERF domain
SMARTSM003802.6E-372386IPR001471AP2/ERF domain
PRINTSPR003676.2E-112435IPR001471AP2/ERF domain
PRINTSPR003676.2E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALRSDDRAG STTKAHQAEL GVHFRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA  60
RAYDSAARAL RGTKAKTNFS PPPPSGDDHS MTSQSSTVES LSNGPMKQSS HHPSKSIHIN  120
LYRSSGGASE SSSWRNRLDL NVSVAQDPLP VTDDGQLQYK SVSAGRSCVE EGVTCALSSK  180
RAGPSPIHAL FEEAGHVVES KRQRVMKKPT PITPTERLSV GRDWLGSEEN TVLGMEQHAS  240
EITPETRACH SDCDSSSSVI LNSEAACATP PTPHDAKPVM RRTPYPFLLD LNQPPCKDRQ  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-202187370ATERF1
3gcc_A6e-202187370ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.42400.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398578.10.0ethylene-responsive transcription factor WRI1-like
TrEMBLA9SW670.0A9SW67_PHYPA; Predicted protein
STRINGPP1S127_75V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-23ERF domain protein 12
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]