PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_3770V3.1.p | ||||||||
Common Name | PHYPADRAFT_189022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 32780.6 Da PI: 8.6051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a++ a+++l+g Pp3c16_3770V3.1.p 23 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 72 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.23E-31 | 23 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-13 | 23 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 23 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.813 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-37 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MALRSDDRAG STTKAHQAEL GVHFRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA 60 RAYDSAARAL RGTKAKTNFS PPPPSGDDHS MTSQSSTVES LSNGPMKQSS HHPSKSIHIN 120 LYRSSGGASE SSSWRNRLDL NVSVAQDPLP VTDDGQLQYK SVSAGRSCVE EGVTCALSSK 180 RAGPSPIHAL FEEAGHVVES KRQRVMKKPT PITPTERLSV GRDWLGSEEN TVLGMEQHAS 240 EITPETRACH SDCDSSSSVI LNSEAACATP PTPHDAKPVM RRTPYPFLLD LNQPPCKDRQ 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 21 | 87 | 3 | 70 | ATERF1 |
3gcc_A | 6e-20 | 21 | 87 | 3 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4240 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398578.1 | 0.0 | ethylene-responsive transcription factor WRI1-like | ||||
TrEMBL | A9SW67 | 0.0 | A9SW67_PHYPA; Predicted protein | ||||
STRING | PP1S127_75V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-23 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_3770V3.1.p |
Entrez Gene | 5933806 |
Publications ? help Back to Top | |||
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