PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_2870V3.3.p | ||||||||
Common Name | PAN3, PHYPADRAFT_170356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 1153aa MW: 124175 Da PI: 7.1254 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 9.1e-10 | 14 | 36 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr++a +GtC +Gd+C+FaH p Pp3c16_2870V3.3.p 14 TCRYWATSGTCFFGDQCNFAHNP 36 6********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.68 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-5 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 12 | 38 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-7 | 14 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-8 | 15 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.352 | 47 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Hamap | MF_03181 | 24.595 | 530 | 1122 | IPR030844 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3 |
Gene3D | G3DSA:3.30.200.20 | 2.2E-8 | 552 | 614 | No hit | No description |
Gene3D | G3DSA:3.30.200.20 | 2.2E-8 | 740 | 885 | No hit | No description |
PROSITE profile | PS50011 | 9.333 | 744 | 1051 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 4.6E-12 | 760 | 973 | IPR011009 | Protein kinase-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000289 | Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0031251 | Cellular Component | PAN complex | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044822 | Molecular Function | poly(A) RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 1153 aa Download sequence Send to blast |
MSVSPQKPPV SNVTCRYWAT SGTCFFGDQC NFAHNPADRA ATGKSVPKRE KACKELLLTG 60 YCKNEKNGCE YNHEIPGVIR AGPPASSTTA ANVSTSVVYS SWSSTASSSL SSGAVAAIRN 120 HRLPVSAPAF VPAAVAAAQR ASLSAWGGVT PGKCVAVTSQ ATSTTISTTQ NDSLSVSSGQ 180 TSVVDTQTTS APGSLVEEAE VSGNPDTISS GISVSTSLSS FSNSLLNAQP FIPSISSAIS 240 GSLNGPSPPY SGTTQGASVG SANATPFVPS GGSVASAVSA VPFVPRSRQH LVTGATTGGG 300 SSGMGWALQP VSSSLMALGG PAPQQQLQIR QHQLSQLQQQ IQQQVAAQAQ VQAQLQAQVQ 360 AQAQAQAHML AAAARGISGS VLSNNQYMGM DMPTVLPSFR LPDGDDPALG MTAMSPPNPS 420 FSTRAQLLQH MQNMQLQQQH QAFSGQSSPY SLRSLQRTGA QTPEKQQQLL NSQSEQQSQS 480 PPYAIWLSQS LGTHTPEKSQ PLALKADAGG SVSSSLALSN DNQVQEHVLP STPERRESDQ 540 LSVQSLEHIG PPQSPQQTGQ IQSPQQQPTA VSQSSTKQQQ QAQIQHQIQL QALQQQRMRH 600 RMQQQQQQQQ QQQHFQQGQR VLTGTGLTQQ RLPSVRSPSP ISGSSPVAAA THGGATYFLG 660 PGQGISSLSH AFSSPVGRNE SRTARSQFPA GTVPFGSRFL PDQLREELRR RHSLIHAQLD 720 PEQDLVDLPE MVQRFHSLYP LEDVNREDEI PSASFGVRTM LFKGISSSDG QAYAIRRIDS 780 HQVIPTAELA NTAVEVVERW APFARHPHIV AIRESFVSRE VEDSAALFFV HDYYPAALTL 840 QAIHLQQEQP SGVVHLTVNE EQLWSYMVQL ATVLRAVHSA GLYFRPGGLH PSKVILTSKG 900 RIRVSGVGIL DVLHGDPSDD PRMFQREDLA GCGRLILALA CGSTANASLE FMGSHYSADL 960 VRITQALLAS SPEKSEGAGI CSIRQLCSAL ADRMFNEIEN VHMQNDENLN ELSKETENGR 1020 LLRILVKLGM INERPEHDMD PAWSEIGDRY LLKLFRDSVF HQTSEEGTPV IDWGHVVECL 1080 NKLDAGVPEK LILLSRDERS MLIASYADLK RCLENVYQEL LVRASGDKAR QAPPQNMLMQ 1140 SPVRLSQRLH VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bwp_A | 3e-74 | 700 | 1126 | 7 | 448 | PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3 |
4bwp_B | 3e-74 | 700 | 1126 | 7 | 448 | PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11393 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398843.1 | 0.0 | PAN2-PAN3 deadenylation complex subunit pan3-like isoform X2 | ||||
TrEMBL | A0A2K1J6Z2 | 0.0 | A0A2K1J6Z2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S242_6V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 4e-06 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_2870V3.3.p |
Entrez Gene | 5941838 |
Publications ? help Back to Top | |||
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