PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_23260V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 511aa MW: 57071 Da PI: 6.612 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154 | 6.7e-48 | 29 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrF+Ptdeelv +yLk+ v+g+++e+ e i+ +d+y+++Pw+Lp + ++ ++e+ew fF++rdkky++g r+nr+t+sgyWkatg Pp3c16_23260V3.2.p 29 LPGFRFQPTDEELVGFYLKNMVTGNRTEV-ELINVLDLYRYDPWELPgSrfamAAMQGEREWLFFCPRDKKYPNGARPNRVTTSGYWKATG 118 59************************999.89**************95367664445788******************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++v ++ +++ +glkktLvfy+g+apkg kt+W+m+eyrl Pp3c16_23260V3.2.p 119 TDRPVRRAhDSRCIGLKKTLVFYTGKAPKGLKTEWIMNEYRL 160 *****99867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-52 | 23 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.851 | 28 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-24 | 30 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MWNQRQAWDS KVLTQSSSPD LALHGMASLP GFRFQPTDEE LVGFYLKNMV TGNRTEVELI 60 NVLDLYRYDP WELPGSRFAM AAMQGEREWL FFCPRDKKYP NGARPNRVTT SGYWKATGTD 120 RPVRRAHDSR CIGLKKTLVF YTGKAPKGLK TEWIMNEYRL PVNIEYFCRT LDLPYNSSAP 180 LMDGREIALC RIYKKPMQIN LSYPNLFSEF TTMDHGDDSS CQFKSSEGEV TGPAALCQNN 240 SILHQSSCDA VLSQPTPSSE WSSSPTSPVS YNPVCYGPSR WSFTNEMDNL CDTASPRFRG 300 QNPMQTLWPT SQYEVPQECQ SSFGGRGVKP ENTSQSLHSS LLCPIPSSEN AHFIQSVFDI 360 KRTNLETQYH DESVFLDAST NKAATENFTD SIPKSNGLRD IVSNRGGILP VEQVVDRLSW 420 LGEQGLDLTP AVRPDAGFQP CGNDSTLTNI NWPPKKSSRP SQLPTPAAKD TVTDLQGSAP 480 TLLFNQCIRN SQQSWLKTIA APSARYALSD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 30 | 195 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 30 | 195 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 30 | 195 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 30 | 195 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 30 | 195 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 30 | 195 | 19 | 165 | NAC domain-containing protein 19 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398320.1 | 0.0 | NAC domain-containing protein 77-like | ||||
TrEMBL | A0A2K1J9R8 | 0.0 | A0A2K1J9R8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S4_283V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-63 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_23260V3.2.p |