PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_17550V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 368aa    MW: 39612.9 Da    PI: 4.8066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_17550V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-1764114155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg++ tae Aa a++ a++ l+g
  Pp3c16_17550V3.4.p  64 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYPTAEIAALAYDSAARVLYG 114
                         56*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-2964122No hitNo description
PfamPF008471.5E-1164113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2965122IPR001471AP2/ERF domain
PROSITE profilePS5103222.5565122IPR001471AP2/ERF domain
SMARTSM003803.8E-3365128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2065122IPR016177DNA-binding domain
PRINTSPR003671.4E-96677IPR001471AP2/ERF domain
PRINTSPR003671.4E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQHGSSVAET LAWWASRNNG IGGKAGANQA DDSNGPRKII RKAPARGSKK GCMKGKGGPE  60
NAMCNYRGVR QRTWGKWVAE IREPNRGSRL WLGTYPTAEI AALAYDSAAR VLYGSNALLN  120
LPGETASPVA GTASTSATSA SSAEIAISDD RSSAKSERVT AKRTPAKHTG KPNNSAASFT  180
DPDPSATLDT ATSLSQHQAA EVALSYDLLE PLPRHPKPEP VQELQLSAEP SFPPLLQEPQ  240
EPMDCNDLLG KEFDLFDFKM DEGDMQLPPS LKTNSNSSTM TDSSAFSRDL WTELACHGDI  300
SETVLDSDHS IASSTTLGED KPEDVHVLRS LTEDDMQRLT MPESPEVTLF EISPSLNRKE  360
AWTSLLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1765122260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398311.10.0dehydration-responsive element-binding protein 2B-like
RefseqXP_024398312.10.0dehydration-responsive element-binding protein 2B-like
TrEMBLA0A2K1J9140.0A0A2K1J914_PHYPA; Uncharacterized protein
STRINGPP1S81_44V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-30ERF family protein