PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_17550V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 39612.9 Da PI: 4.8066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg++ tae Aa a++ a++ l+g Pp3c16_17550V3.2.p 64 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYPTAEIAALAYDSAARVLYG 114 56*****999.**********8...3.35**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-29 | 64 | 122 | No hit | No description |
Pfam | PF00847 | 1.5E-11 | 64 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-29 | 65 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 65 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-33 | 65 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 65 | 122 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-9 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MQHGSSVAET LAWWASRNNG IGGKAGANQA DDSNGPRKII RKAPARGSKK GCMKGKGGPE 60 NAMCNYRGVR QRTWGKWVAE IREPNRGSRL WLGTYPTAEI AALAYDSAAR VLYGSNALLN 120 LPGETASPVA GTASTSATSA SSAEIAISDD RSSAKSERVT AKRTPAKHTG KPNNSAASFT 180 DPDPSATLDT ATSLSQHQAA EVALSYDLLE PLPRHPKPEP VQELQLSAEP SFPPLLQEPQ 240 EPMDCNDLLG KEFDLFDFKM DEGDMQLPPS LKTNSNSSTM TDSSAFSRDL WTELACHGDI 300 SETVLDSDHS IASSTTLGED KPEDVHVLRS LTEDDMQRLT MPESPEVTLF EISPSLNRKE 360 AWTSLLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 65 | 122 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398311.1 | 0.0 | dehydration-responsive element-binding protein 2B-like | ||||
Refseq | XP_024398312.1 | 0.0 | dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A2K1J914 | 0.0 | A0A2K1J914_PHYPA; Uncharacterized protein | ||||
STRING | PP1S81_44V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_17550V3.2.p |