PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_15760V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 851aa MW: 94517.2 Da PI: 6.3513 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 254.3 | 4.6e-78 | 437 | 832 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl...fse 86 +lL cA a++s++ +++q+l++ l++las gd++qR aay ++AL r+++ ++ + l+p++ +++ +++++ f+e Pp3c16_15760V3.2.p 437 MQLLNLCAAAIASRNISRTQHLMWVLNDLASVVGDANQRFAAYGLRALFCRITGRMEAASTFLRPRHYDQEIsfgP---KTVHRAlvkFHE 524 589999************************************************9999999999999987764433...333333456*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.........skeeleetgerLak 167 P++++++ +a q ++e +g+ r+H iD+++++G+ Wp +++aL sRp+gpp l+iT + +++ + + e + rL k Pp3c16_15760V3.2.p 525 YVPWHQICYTAACQILMEVCAGKARLHLIDIGAGKGIEWPIFIDALVSRPGGPPaILKITMIRDQRREelnmrtaksVNSEAADLMTRLVK 615 **************************************************888879********88779999998877788889999**** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvvvvveqead 247 fA +g+++e nv v+k+le+++ e+L+++ gE+la +++++hrl s +l s+rd++ +++ sl+P+v++++++++d Pp3c16_15760V3.2.p 616 FAGLVGLHVEVNV-VTKALECVTREDLKIRDGETLAAVCQFRIHRLSeevpdratksnPTSRPLLSPRDDFFDFLFSLKPDVFIMSDNDSD 705 ************9.7********************************99999888766555666679************************ PP GRAS 248 hnsesFlerflealeyysalfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 h s++Fl+rf +a+++ + +++s++ ++ +r+seer+ +E e g + n+vaceg++r+er+e++ +W++r+++aGF p +ls+++ k Pp3c16_15760V3.2.p 706 HCSHDFLTRFQNAISFWWRCYESMDIGYnGRDSEERQIIEYE-GGMMVLNMVACEGFARIERNESYPQWQRRITRAGFVPQNLSDETKKVC 795 ************************7765267889******99.9*********************************************** PP GRAS 338 klllrkvksdgyrveeesgslv.lgWkdrpLvsvSaWr 374 ++l+++++ + +++ + +v l W+++p +++S+W+ Pp3c16_15760V3.2.p 796 QTLISNHS-EFWELSFTDSNVVnLLWRKQPTTFTSVWK 832 *******9.44788876666666**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.842 | 410 | 812 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-75 | 437 | 832 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MKPEAPVPLT SQGHRAGGNE HRHLASNSMT MFGSNAWDRA TQHPTDLVGD NLHQGGATRH 60 WVSPYSDPQL EYVYLGTPHQ GSPQTSQVAS PQRWPMPDAT LNPSLAPPAS NNVQYFQPTS 120 GHPTSGQPTS GHAYIDHNGY NAAPTGTAQP SYTMPSSHFQ LSQFQTVQRF GGVLSQETYE 180 GPAVSELQYD NIWSISESNF LAQRSPQFNV APGDIDMVEG YGLNSSANMQ TPMASQLQQG 240 GSVGNSTGNW TMLSQSPVLD DVGSSSSGQG AYNSTITGQT SMGGDNQGFL HDHHHSEGSR 300 DCDRALFQLG GMPLPNVGYG ETVMNPRLDY MNIVMEDTVS DGVSSTSTVD NRSSRDARAQ 360 TPYGHDQSGQ GSSPLDSSVR EQFQHNHQQR LEHREAYNTS ARSDYNGQAT AMDNDFTQLI 420 ASGFSGIRHL GEPRWAMQLL NLCAAAIASR NISRTQHLMW VLNDLASVVG DANQRFAAYG 480 LRALFCRITG RMEAASTFLR PRHYDQEISF GPKTVHRALV KFHEYVPWHQ ICYTAACQIL 540 MEVCAGKARL HLIDIGAGKG IEWPIFIDAL VSRPGGPPAI LKITMIRDQR REELNMRTAK 600 SVNSEAADLM TRLVKFAGLV GLHVEVNVVT KALECVTRED LKIRDGETLA AVCQFRIHRL 660 SEEVPDRATK SNPTSRPLLS PRDDFFDFLF SLKPDVFIMS DNDSDHCSHD FLTRFQNAIS 720 FWWRCYESMD IGYNGRDSEE RQIIEYEGGM MVLNMVACEG FARIERNESY PQWQRRITRA 780 GFVPQNLSDE TKKVCQTLIS NHSEFWELSF TDSNVVNLLW RKQPTTFTSV WKMPQSYSSS 840 SSCQSTLIHN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-40 | 434 | 832 | 85 | 473 | Protein SHORT-ROOT |
5b3h_B | 6e-41 | 434 | 832 | 31 | 419 | Protein SHORT-ROOT |
5b3h_E | 6e-41 | 434 | 832 | 31 | 419 | Protein SHORT-ROOT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398699.1 | 0.0 | protein SHORT-ROOT-like isoform X2 | ||||
TrEMBL | A0A2K1J8P8 | 0.0 | A0A2K1J8P8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S197_153V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 8e-50 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_15760V3.2.p |