PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_15760V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 851aa    MW: 94517.2 Da    PI: 6.3513
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_15760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.34.6e-784378322374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl...fse 86 
                          +lL  cA a++s++ +++q+l++ l++las  gd++qR aay ++AL  r+++ ++  +  l+p++ +++         +++++   f+e
  Pp3c16_15760V3.1.p 437 MQLLNLCAAAIASRNISRTQHLMWVLNDLASVVGDANQRFAAYGLRALFCRITGRMEAASTFLRPRHYDQEIsfgP---KTVHRAlvkFHE 524
                         589999************************************************9999999999999987764433...333333456*** PP

                GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.........skeeleetgerLak 167
                           P++++++ +a q ++e  +g+ r+H iD+++++G+ Wp +++aL sRp+gpp  l+iT + +++ +          + e   +  rL k
  Pp3c16_15760V3.1.p 525 YVPWHQICYTAACQILMEVCAGKARLHLIDIGAGKGIEWPIFIDALVSRPGGPPaILKITMIRDQRREelnmrtaksVNSEAADLMTRLVK 615
                         **************************************************888879********88779999998877788889999**** PP

                GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvvvvveqead 247
                         fA  +g+++e nv v+k+le+++ e+L+++ gE+la  +++++hrl              s +l s+rd++ +++ sl+P+v++++++++d
  Pp3c16_15760V3.1.p 616 FAGLVGLHVEVNV-VTKALECVTREDLKIRDGETLAAVCQFRIHRLSeevpdratksnPTSRPLLSPRDDFFDFLFSLKPDVFIMSDNDSD 705
                         ************9.7********************************99999888766555666679************************ PP

                GRAS 248 hnsesFlerflealeyysalfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                         h s++Fl+rf +a+++ + +++s++ ++ +r+seer+ +E e  g  + n+vaceg++r+er+e++ +W++r+++aGF p +ls+++ k  
  Pp3c16_15760V3.1.p 706 HCSHDFLTRFQNAISFWWRCYESMDIGYnGRDSEERQIIEYE-GGMMVLNMVACEGFARIERNESYPQWQRRITRAGFVPQNLSDETKKVC 795
                         ************************7765267889******99.9*********************************************** PP

                GRAS 338 klllrkvksdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                         ++l+++++ + +++   +  +v l W+++p +++S+W+
  Pp3c16_15760V3.1.p 796 QTLISNHS-EFWELSFTDSNVVnLLWRKQPTTFTSVWK 832
                         *******9.44788876666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.842410812IPR005202Transcription factor GRAS
PfamPF035141.6E-75437832IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MKPEAPVPLT SQGHRAGGNE HRHLASNSMT MFGSNAWDRA TQHPTDLVGD NLHQGGATRH  60
WVSPYSDPQL EYVYLGTPHQ GSPQTSQVAS PQRWPMPDAT LNPSLAPPAS NNVQYFQPTS  120
GHPTSGQPTS GHAYIDHNGY NAAPTGTAQP SYTMPSSHFQ LSQFQTVQRF GGVLSQETYE  180
GPAVSELQYD NIWSISESNF LAQRSPQFNV APGDIDMVEG YGLNSSANMQ TPMASQLQQG  240
GSVGNSTGNW TMLSQSPVLD DVGSSSSGQG AYNSTITGQT SMGGDNQGFL HDHHHSEGSR  300
DCDRALFQLG GMPLPNVGYG ETVMNPRLDY MNIVMEDTVS DGVSSTSTVD NRSSRDARAQ  360
TPYGHDQSGQ GSSPLDSSVR EQFQHNHQQR LEHREAYNTS ARSDYNGQAT AMDNDFTQLI  420
ASGFSGIRHL GEPRWAMQLL NLCAAAIASR NISRTQHLMW VLNDLASVVG DANQRFAAYG  480
LRALFCRITG RMEAASTFLR PRHYDQEISF GPKTVHRALV KFHEYVPWHQ ICYTAACQIL  540
MEVCAGKARL HLIDIGAGKG IEWPIFIDAL VSRPGGPPAI LKITMIRDQR REELNMRTAK  600
SVNSEAADLM TRLVKFAGLV GLHVEVNVVT KALECVTRED LKIRDGETLA AVCQFRIHRL  660
SEEVPDRATK SNPTSRPLLS PRDDFFDFLF SLKPDVFIMS DNDSDHCSHD FLTRFQNAIS  720
FWWRCYESMD IGYNGRDSEE RQIIEYEGGM MVLNMVACEG FARIERNESY PQWQRRITRA  780
GFVPQNLSDE TKKVCQTLIS NHSEFWELSF TDSNVVNLLW RKQPTTFTSV WKMPQSYSSS  840
SSCQSTLIHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-4043483285473Protein SHORT-ROOT
5b3h_B6e-4143483231419Protein SHORT-ROOT
5b3h_E6e-4143483231419Protein SHORT-ROOT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398699.10.0protein SHORT-ROOT-like isoform X2
TrEMBLA0A2K1J8P80.0A0A2K1J8P8_PHYPA; Uncharacterized protein
STRINGPP1S197_153V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.18e-50GRAS family protein