PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_15118V3.4.p

Common Name

PHYPADRAFT_67495

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HB-other

Protein Properties

Length: 1828aa MW: 203190 Da PI: 4.6862

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_15118V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	17	71	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++F+++ryp ++ r+eL+++l+L+++q ++WF+ rR k++k Pp3c16_15118V3.4.p 17 KRRMKTPVQLEALERVFAEDRYPAEAVRAELSTQLNLSDKQLQMWFCHRRLKDRK 71 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.082	12	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	12	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	13	72	IPR009057	Homeodomain-like
SMART	SM00389	7.9E-16	14	76	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	17	71	IPR001356	Homeobox domain
CDD	cd00086	1.84E-13	17	73	No hit	No description
SMART	SM00571	3.7E-18	507	566	IPR018501	DDT domain
PROSITE profile	PS50827	16.381	507	566	IPR018501	DDT domain
Pfam	PF02791	7.7E-15	509	563	IPR018501	DDT domain
Pfam	PF05066	2.8E-11	690	757	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.3E-8	928	967	IPR028942	WHIM1 domain
Pfam	PF15613	8.9E-15	1106	1179	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1828 aa Download sequence Send to blast
MELVDRRRLS PDDHNLKRRM KTPVQLEALE RVFAEDRYPA EAVRAELSTQ LNLSDKQLQM 60 WFCHRRLKDR KGKDEDSTNV NANVNANANV ARKKPRTEKQ NMTQYPGAVL ASEPGGAAVL 120 PRDQFAEEYQ YENSERFTPE ELKPRSRKSG PRDGSFPGKR RNQALSARVA KAEAAAIAAV 180 EAQLGEPLRE VGPPLGLEFD PLPPGAFTTH VEEMPAEPRP AMEQEQHFPT ERLYETPEAQ 240 NNTMFEPSAT LGLATMPNLG GTKRKSMGPP STDPHPLHYE SRPVREYQFL PEQPERLEEN 300 QYFERPTPLN LFPAPERTTL ELLQQSRLEE VRLQKEYELH EKKLRKEFEK QEVLRRKREE 360 QVRKEQDRLE KERLREEERL RRDRLKEQER IQREQKREAE RLEKESKRME KQRRREEARK 420 EKQAAKLKAA NERALAKRLA KDMTDLMDDE ELERMEASAA ASSLNLAFFA PFGKNGMDTS 480 QVVLKPFPPP NVRMKPVVAI QPWSNSDQNI GNLLLVWRFL TTFADVVGLW PFTLDELVQA 540 YHDYDSRLLG EIHVALLKTL VRDIEEAAQA VSGGMVGQRD AIAMAAGGHP QLVEAAFAWG 600 FDIREWGKHV NPLTWPEILR QFALAAGFGP KWKKRKVLPD RSKEVPAEGE DGEDIVAKLR 660 SGAAAVNAVA SMQGRGMGHL RRSQYRLTPG TVKYAAFHVL SLEGEKGLNI AQVADRIQTS 720 GLRDLSSSRT PEASIAAALS RDTVLFERTA PSTYCVRPQF RKDSEDAEEI LSAARERIRL 780 FRSGLVDGEA DKDVDEADRE EYESEGQDVD DVEDLEEEDL EDGVPGSSEK KGDVKTEDAK 840 DESDSKETKT VTTSQQKIHP SSELSEGANN GLSKAKAVSV SSKREIDDEE DEEEEEEEHN 900 LGKDDSLQED QKTGIQLEEE TEIDESQVGE PWVQGLVEGE YADLSVEERL NALVALVTVV 960 NEGNAIRIAL EERLEAATAL KRQMWAEMQL EKRRHKEELL SRSHFSLLPG TIKTDGESPD 1020 PEHMTSGTLA LYDHGQLDMN MPNTDGTGYI EAFAGNGKSF NELSNGVVAH EAGPSAGAVS 1080 GNHLAEKSRA QAKADIGLRA EELYVFRSQP LGSDRRHNRY WQFVTGNGGQ DPGCGRLFFE 1140 SNSDGCWGVI DTEEAFDVLL ASLDPRGARE AALTAILNRL EGTLRQGMRL KASDTANSSP 1200 IKGSTTIPNK HPGLKGIEES PVSSISGSES DSPAVLSAIS VELGKTSREQ KQALERYKEA 1260 EKWIWSECST GGSALKATKA GLRREARVLV VCDVCHELYT SKDKHCQCCH ATFDKSSSPR 1320 VFSEHTRDCE EKRRKCDPNW KLQGPVASMP SRLQLLKTEI IKIESAIPTK ALNKDWTDHQ 1380 RKLWAASVKA ATEPNQVLQA LTILESMIER DWLSSTYETT EEIASAAAEA NGFGNQGLIP 1440 FWVPPTTAAV ALRIRLLDNA IAYSQEAKEE REKQEIEDEI NQKNTKMSTF RFSPEGLPGD 1500 QEDEQPTDVL ETAPSLSGKG RSRVRSSGGG RVRGGKGSQG AQTGQTGGRR RSTVSAGGGS 1560 KSRVRSSNSA TKSGLKRKLQ FQEGAEEAAP SDLKQWGGAA KGRSARSGGS RGGKSTARRS 1620 SRGQAGPRSR ARRGQTGARR LGQKQRNPND LMVPSGRSQS KIAKAASDCA AANPDREDDD 1680 EMEEVSNGGD SQAGYADEGY EDGDQYDAEE NNDDGDAEEQ NGSDLGERME EGEEVDEEQA 1740 EEDEGEEMDE EGEEELEDDD GDGEGQEEDD GYDKEEPRRN AYERGGRSSY GRAAEDEGEG 1800 EEEGEGGGDE TEDEDDQEER QSYSDED*

Sequence ? help Back to Top

Protein Sequence Length: 1828 aa Download sequence Send to blast

MELVDRRRLS PDDHNLKRRM KTPVQLEALE RVFAEDRYPA EAVRAELSTQ LNLSDKQLQM  60
WFCHRRLKDR KGKDEDSTNV NANVNANANV ARKKPRTEKQ NMTQYPGAVL ASEPGGAAVL  120
PRDQFAEEYQ YENSERFTPE ELKPRSRKSG PRDGSFPGKR RNQALSARVA KAEAAAIAAV  180
EAQLGEPLRE VGPPLGLEFD PLPPGAFTTH VEEMPAEPRP AMEQEQHFPT ERLYETPEAQ  240
NNTMFEPSAT LGLATMPNLG GTKRKSMGPP STDPHPLHYE SRPVREYQFL PEQPERLEEN  300
QYFERPTPLN LFPAPERTTL ELLQQSRLEE VRLQKEYELH EKKLRKEFEK QEVLRRKREE  360
QVRKEQDRLE KERLREEERL RRDRLKEQER IQREQKREAE RLEKESKRME KQRRREEARK  420
EKQAAKLKAA NERALAKRLA KDMTDLMDDE ELERMEASAA ASSLNLAFFA PFGKNGMDTS  480
QVVLKPFPPP NVRMKPVVAI QPWSNSDQNI GNLLLVWRFL TTFADVVGLW PFTLDELVQA  540
YHDYDSRLLG EIHVALLKTL VRDIEEAAQA VSGGMVGQRD AIAMAAGGHP QLVEAAFAWG  600
FDIREWGKHV NPLTWPEILR QFALAAGFGP KWKKRKVLPD RSKEVPAEGE DGEDIVAKLR  660
SGAAAVNAVA SMQGRGMGHL RRSQYRLTPG TVKYAAFHVL SLEGEKGLNI AQVADRIQTS  720
GLRDLSSSRT PEASIAAALS RDTVLFERTA PSTYCVRPQF RKDSEDAEEI LSAARERIRL  780
FRSGLVDGEA DKDVDEADRE EYESEGQDVD DVEDLEEEDL EDGVPGSSEK KGDVKTEDAK  840
DESDSKETKT VTTSQQKIHP SSELSEGANN GLSKAKAVSV SSKREIDDEE DEEEEEEEHN  900
LGKDDSLQED QKTGIQLEEE TEIDESQVGE PWVQGLVEGE YADLSVEERL NALVALVTVV  960
NEGNAIRIAL EERLEAATAL KRQMWAEMQL EKRRHKEELL SRSHFSLLPG TIKTDGESPD  1020
PEHMTSGTLA LYDHGQLDMN MPNTDGTGYI EAFAGNGKSF NELSNGVVAH EAGPSAGAVS  1080
GNHLAEKSRA QAKADIGLRA EELYVFRSQP LGSDRRHNRY WQFVTGNGGQ DPGCGRLFFE  1140
SNSDGCWGVI DTEEAFDVLL ASLDPRGARE AALTAILNRL EGTLRQGMRL KASDTANSSP  1200
IKGSTTIPNK HPGLKGIEES PVSSISGSES DSPAVLSAIS VELGKTSREQ KQALERYKEA  1260
EKWIWSECST GGSALKATKA GLRREARVLV VCDVCHELYT SKDKHCQCCH ATFDKSSSPR  1320
VFSEHTRDCE EKRRKCDPNW KLQGPVASMP SRLQLLKTEI IKIESAIPTK ALNKDWTDHQ  1380
RKLWAASVKA ATEPNQVLQA LTILESMIER DWLSSTYETT EEIASAAAEA NGFGNQGLIP  1440
FWVPPTTAAV ALRIRLLDNA IAYSQEAKEE REKQEIEDEI NQKNTKMSTF RFSPEGLPGD  1500
QEDEQPTDVL ETAPSLSGKG RSRVRSSGGG RVRGGKGSQG AQTGQTGGRR RSTVSAGGGS  1560
KSRVRSSNSA TKSGLKRKLQ FQEGAEEAAP SDLKQWGGAA KGRSARSGGS RGGKSTARRS  1620
SRGQAGPRSR ARRGQTGARR LGQKQRNPND LMVPSGRSQS KIAKAASDCA AANPDREDDD  1680
EMEEVSNGGD SQAGYADEGY EDGDQYDAEE NNDDGDAEEQ NGSDLGERME EGEEVDEEQA  1740
EEDEGEEMDE EGEEELEDDD GDGEGQEEDD GYDKEEPRRN AYERGGRSSY GRAAEDEGEG  1800
EEEGEGGGDE TEDEDDQEER QSYSDED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	383	RLRRDR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8770	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398539.1	0.0	homeobox-DDT domain protein RLT2-like isoform X2
TrEMBL	A0A2K1J8P1	0.0	A0A2K1J8P1_PHYPA; Uncharacterized protein
STRING	PP1S15_37V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-119	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pp3c16_15118V3.4.p
Entrez Gene	5918008

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]