PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_15118V3.2.p

Common Name

PHYPADRAFT_67495

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HB-other

Protein Properties

Length: 1829aa MW: 203318 Da PI: 4.6862

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_15118V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	17	71	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++F+++ryp ++ r+eL+++l+L+++q ++WF+ rR k++k Pp3c16_15118V3.2.p 17 KRRMKTPVQLEALERVFAEDRYPAEAVRAELSTQLNLSDKQLQMWFCHRRLKDRK 71 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.082	12	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	12	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	13	72	IPR009057	Homeodomain-like
SMART	SM00389	7.9E-16	14	76	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	17	71	IPR001356	Homeobox domain
CDD	cd00086	1.91E-13	17	73	No hit	No description
SMART	SM00571	3.7E-18	508	567	IPR018501	DDT domain
PROSITE profile	PS50827	16.381	508	567	IPR018501	DDT domain
Pfam	PF02791	7.7E-15	510	564	IPR018501	DDT domain
Pfam	PF05066	2.8E-11	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.3E-8	929	968	IPR028942	WHIM1 domain
Pfam	PF15613	8.9E-15	1107	1180	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1829 aa Download sequence Send to blast
MELVDRRRLS PDDHNLKRRM KTPVQLEALE RVFAEDRYPA EAVRAELSTQ LNLSDKQLQM 60 WFCHRRLKDR KGKDEDSTNV NANVNANANV ARKKPRTEKQ NMTQYPGAVL ASEPGGAAVL 120 PRDQFAEEYQ YENSERFTPE QELKPRSRKS GPRDGSFPGK RRNQALSARV AKAEAAAIAA 180 VEAQLGEPLR EVGPPLGLEF DPLPPGAFTT HVEEMPAEPR PAMEQEQHFP TERLYETPEA 240 QNNTMFEPSA TLGLATMPNL GGTKRKSMGP PSTDPHPLHY ESRPVREYQF LPEQPERLEE 300 NQYFERPTPL NLFPAPERTT LELLQQSRLE EVRLQKEYEL HEKKLRKEFE KQEVLRRKRE 360 EQVRKEQDRL EKERLREEER LRRDRLKEQE RIQREQKREA ERLEKESKRM EKQRRREEAR 420 KEKQAAKLKA ANERALAKRL AKDMTDLMDD EELERMEASA AASSLNLAFF APFGKNGMDT 480 SQVVLKPFPP PNVRMKPVVA IQPWSNSDQN IGNLLLVWRF LTTFADVVGL WPFTLDELVQ 540 AYHDYDSRLL GEIHVALLKT LVRDIEEAAQ AVSGGMVGQR DAIAMAAGGH PQLVEAAFAW 600 GFDIREWGKH VNPLTWPEIL RQFALAAGFG PKWKKRKVLP DRSKEVPAEG EDGEDIVAKL 660 RSGAAAVNAV ASMQGRGMGH LRRSQYRLTP GTVKYAAFHV LSLEGEKGLN IAQVADRIQT 720 SGLRDLSSSR TPEASIAAAL SRDTVLFERT APSTYCVRPQ FRKDSEDAEE ILSAARERIR 780 LFRSGLVDGE ADKDVDEADR EEYESEGQDV DDVEDLEEED LEDGVPGSSE KKGDVKTEDA 840 KDESDSKETK TVTTSQQKIH PSSELSEGAN NGLSKAKAVS VSSKREIDDE EDEEEEEEEH 900 NLGKDDSLQE DQKTGIQLEE ETEIDESQVG EPWVQGLVEG EYADLSVEER LNALVALVTV 960 VNEGNAIRIA LEERLEAATA LKRQMWAEMQ LEKRRHKEEL LSRSHFSLLP GTIKTDGESP 1020 DPEHMTSGTL ALYDHGQLDM NMPNTDGTGY IEAFAGNGKS FNELSNGVVA HEAGPSAGAV 1080 SGNHLAEKSR AQAKADIGLR AEELYVFRSQ PLGSDRRHNR YWQFVTGNGG QDPGCGRLFF 1140 ESNSDGCWGV IDTEEAFDVL LASLDPRGAR EAALTAILNR LEGTLRQGMR LKASDTANSS 1200 PIKGSTTIPN KHPGLKGIEE SPVSSISGSE SDSPAVLSAI SVELGKTSRE QKQALERYKE 1260 AEKWIWSECS TGGSALKATK AGLRREARVL VVCDVCHELY TSKDKHCQCC HATFDKSSSP 1320 RVFSEHTRDC EEKRRKCDPN WKLQGPVASM PSRLQLLKTE IIKIESAIPT KALNKDWTDH 1380 QRKLWAASVK AATEPNQVLQ ALTILESMIE RDWLSSTYET TEEIASAAAE ANGFGNQGLI 1440 PFWVPPTTAA VALRIRLLDN AIAYSQEAKE EREKQEIEDE INQKNTKMST FRFSPEGLPG 1500 DQEDEQPTDV LETAPSLSGK GRSRVRSSGG GRVRGGKGSQ GAQTGQTGGR RRSTVSAGGG 1560 SKSRVRSSNS ATKSGLKRKL QFQEGAEEAA PSDLKQWGGA AKGRSARSGG SRGGKSTARR 1620 SSRGQAGPRS RARRGQTGAR RLGQKQRNPN DLMVPSGRSQ SKIAKAASDC AAANPDREDD 1680 DEMEEVSNGG DSQAGYADEG YEDGDQYDAE ENNDDGDAEE QNGSDLGERM EEGEEVDEEQ 1740 AEEDEGEEMD EEGEEELEDD DGDGEGQEED DGYDKEEPRR NAYERGGRSS YGRAAEDEGE 1800 GEEEGEGGGD ETEDEDDQEE RQSYSDED*

Sequence ? help Back to Top

Protein Sequence Length: 1829 aa Download sequence Send to blast

MELVDRRRLS PDDHNLKRRM KTPVQLEALE RVFAEDRYPA EAVRAELSTQ LNLSDKQLQM  60
WFCHRRLKDR KGKDEDSTNV NANVNANANV ARKKPRTEKQ NMTQYPGAVL ASEPGGAAVL  120
PRDQFAEEYQ YENSERFTPE QELKPRSRKS GPRDGSFPGK RRNQALSARV AKAEAAAIAA  180
VEAQLGEPLR EVGPPLGLEF DPLPPGAFTT HVEEMPAEPR PAMEQEQHFP TERLYETPEA  240
QNNTMFEPSA TLGLATMPNL GGTKRKSMGP PSTDPHPLHY ESRPVREYQF LPEQPERLEE  300
NQYFERPTPL NLFPAPERTT LELLQQSRLE EVRLQKEYEL HEKKLRKEFE KQEVLRRKRE  360
EQVRKEQDRL EKERLREEER LRRDRLKEQE RIQREQKREA ERLEKESKRM EKQRRREEAR  420
KEKQAAKLKA ANERALAKRL AKDMTDLMDD EELERMEASA AASSLNLAFF APFGKNGMDT  480
SQVVLKPFPP PNVRMKPVVA IQPWSNSDQN IGNLLLVWRF LTTFADVVGL WPFTLDELVQ  540
AYHDYDSRLL GEIHVALLKT LVRDIEEAAQ AVSGGMVGQR DAIAMAAGGH PQLVEAAFAW  600
GFDIREWGKH VNPLTWPEIL RQFALAAGFG PKWKKRKVLP DRSKEVPAEG EDGEDIVAKL  660
RSGAAAVNAV ASMQGRGMGH LRRSQYRLTP GTVKYAAFHV LSLEGEKGLN IAQVADRIQT  720
SGLRDLSSSR TPEASIAAAL SRDTVLFERT APSTYCVRPQ FRKDSEDAEE ILSAARERIR  780
LFRSGLVDGE ADKDVDEADR EEYESEGQDV DDVEDLEEED LEDGVPGSSE KKGDVKTEDA  840
KDESDSKETK TVTTSQQKIH PSSELSEGAN NGLSKAKAVS VSSKREIDDE EDEEEEEEEH  900
NLGKDDSLQE DQKTGIQLEE ETEIDESQVG EPWVQGLVEG EYADLSVEER LNALVALVTV  960
VNEGNAIRIA LEERLEAATA LKRQMWAEMQ LEKRRHKEEL LSRSHFSLLP GTIKTDGESP  1020
DPEHMTSGTL ALYDHGQLDM NMPNTDGTGY IEAFAGNGKS FNELSNGVVA HEAGPSAGAV  1080
SGNHLAEKSR AQAKADIGLR AEELYVFRSQ PLGSDRRHNR YWQFVTGNGG QDPGCGRLFF  1140
ESNSDGCWGV IDTEEAFDVL LASLDPRGAR EAALTAILNR LEGTLRQGMR LKASDTANSS  1200
PIKGSTTIPN KHPGLKGIEE SPVSSISGSE SDSPAVLSAI SVELGKTSRE QKQALERYKE  1260
AEKWIWSECS TGGSALKATK AGLRREARVL VVCDVCHELY TSKDKHCQCC HATFDKSSSP  1320
RVFSEHTRDC EEKRRKCDPN WKLQGPVASM PSRLQLLKTE IIKIESAIPT KALNKDWTDH  1380
QRKLWAASVK AATEPNQVLQ ALTILESMIE RDWLSSTYET TEEIASAAAE ANGFGNQGLI  1440
PFWVPPTTAA VALRIRLLDN AIAYSQEAKE EREKQEIEDE INQKNTKMST FRFSPEGLPG  1500
DQEDEQPTDV LETAPSLSGK GRSRVRSSGG GRVRGGKGSQ GAQTGQTGGR RRSTVSAGGG  1560
SKSRVRSSNS ATKSGLKRKL QFQEGAEEAA PSDLKQWGGA AKGRSARSGG SRGGKSTARR  1620
SSRGQAGPRS RARRGQTGAR RLGQKQRNPN DLMVPSGRSQ SKIAKAASDC AAANPDREDD  1680
DEMEEVSNGG DSQAGYADEG YEDGDQYDAE ENNDDGDAEE QNGSDLGERM EEGEEVDEEQ  1740
AEEDEGEEMD EEGEEELEDD DGDGEGQEED DGYDKEEPRR NAYERGGRSS YGRAAEDEGE  1800
GEEEGEGGGD ETEDEDDQEE RQSYSDED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	384	RLRRDR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8770	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398533.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Refseq	XP_024398535.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Refseq	XP_024398536.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Refseq	XP_024398537.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Refseq	XP_024398538.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
TrEMBL	A0A2K1J8P1	0.0	A0A2K1J8P1_PHYPA; Uncharacterized protein
STRING	PP1S15_37V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-119	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pp3c16_15118V3.2.p
Entrez Gene	5918008

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]