PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_14300V3.3.p | ||||||||
Common Name | PHYPADRAFT_176001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 652aa MW: 71536.8 Da PI: 6.3471 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.4 | 9.2e-07 | 332 | 353 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f + G C++G++CkF H+ Pp3c16_14300V3.3.p 332 VCFEFVKQGSCSRGETCKFKHD 353 56678899*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 1.08E-54 | 11 | 244 | No hit | No description |
PROSITE profile | PS50103 | 13.056 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-5 | 331 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 331 | 353 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 332 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.281 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 360 | 386 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-5 | 364 | 389 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 365 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.474 | 395 | 423 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.025 | 397 | 422 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 400 | 426 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 401 | 428 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54197 | 6.8E-11 | 429 | 537 | IPR011146 | HIT-like domain |
Pfam | PF04677 | 8.6E-34 | 431 | 544 | IPR006768 | Cwf19-like, C-terminal domain-1 |
Gene3D | G3DSA:3.30.428.10 | 3.8E-7 | 434 | 512 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 1.1E-13 | 567 | 648 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MNGGKQAPRI LVFGDVLGRL DALFKRVQSV NKSNGPFDAA LCVGQFFPED ERWVEGMEGY 60 FTGEKPVPLP TYFIGDYGEG ANSLLAPARK TALDLGFSMG GIPVCDNLFY LKGSGILNLK 120 GLRIAYLSGR YIPDVYQNAR GAEASGGHFE DDVDALRAIA DDKEITDIFL SNEWPLGVHN 180 AADSSSDPNG IDLASTGSDI AAELASLLKP RYHFAGSEGV FYAREPYINP DSTHVTRFIG 240 VGAVGNDKKQ KFAHALAPTP ASEMSPLDLA ARPTNTTPSP YIKGAHNKST TGTTQKRDVS 300 QMDKANEENV QHWRYDTSQG KRQKRNDGGD RVCFEFVKQG SCSRGETCKF KHDLGNGVPI 360 PKGACFDFVT KGRCEKGADC RFKHSLEDWG PAEKALPPGS CFDFFRKGQC ERGSECRFSH 420 SLDDPRPPRA PPSACWFCLS SPNIETHLVV SVGDHCYCAI AKGPLCPGHV LILPIEHQPS 480 IVSLPSDAEL ELDKYKHSIR ECFKKQGKAT IFFERYLQLR AGTHAHLQAV PIPLSMASLA 540 LSSFVSSAKE VGFSFEVIHQ EDNDNEAKQR LKELVGGGVN YFIVELHEGT LLVHPLPQGE 600 KLPMQFGREV LAKILGTPER GDWKQCKLDV SEETALADQF KEQFQEFDPM P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6id0_U | 2e-13 | 430 | 648 | 670 | 887 | CWF19-like protein 2 |
6id1_U | 2e-13 | 430 | 648 | 670 | 887 | CWF19-like protein 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13133 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399682.1 | 0.0 | zinc finger CCCH domain-containing protein 59-like isoform X1 | ||||
TrEMBL | A0A2K1J8J0 | 0.0 | A0A2K1J8J0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S15_97V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_14300V3.3.p |
Entrez Gene | 5918201 |
Publications ? help Back to Top | |||
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