PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_14300V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 536aa    MW: 59006.5 Da    PI: 6.4248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_14300V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07216237526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C  f + G C++G++CkF H+
  Pp3c16_14300V3.2.p 216 VCFEFVKQGSCSRGETCKFKHD 237
                         56678999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.82E-3050128No hitNo description
PROSITE profilePS5010313.056211239IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4213238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4215237IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4216237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281243271IPR000571Zinc finger, CCCH-type
SMARTSM003560.013244270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5248273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474279307IPR000571Zinc finger, CCCH-type
SMARTSM003560.025281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5284310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5285312IPR000571Zinc finger, CCCH-type
SuperFamilySSF541975.1E-11313421IPR011146HIT-like domain
PfamPF046776.3E-34315428IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.102.9E-7318396IPR011146HIT-like domain
PfamPF046768.5E-14451532IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLISGLRIAY LSGRYIPDVY QNARGAEASG GHFEDDVDAL RAIADDKEIT DIFLSNEWPL  60
GVHNAADSSS DPNGIDLAST GSDIAAELAS LLKPRYHFAG SEGVFYAREP YINPDSTHVT  120
RFIGVGAVGN DKKQKFAHAL APTPASEMSP LDLAARPTNT TPSPYIKGAH NKSTTGTTQK  180
RDVSQMDKAN EENVQHWRYD TSQGKRQKRN DGGDRVCFEF VKQGSCSRGE TCKFKHDLGN  240
GVPIPKGACF DFVTKGRCEK GADCRFKHSL EDWGPAEKAL PPGSCFDFFR KGQCERGSEC  300
RFSHSLDDPR PPRAPPSACW FCLSSPNIET HLVVSVGDHC YCAIAKGPLC PGHVLILPIE  360
HQPSIVSLPS DAELELDKYK HSIRECFKKQ GKATIFFERY LQLRAGTHAH LQAVPIPLSM  420
ASLALSSFVS SAKEVGFSFE VIHQEDNDNE AKQRLKELVG GGVNYFIVEL HEGTLLVHPL  480
PQGEKLPMQF GREVLAKILG TPERGDWKQC KLDVSEETAL ADQFKEQFQE FDPMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U8e-14314532670887CWF19-like protein 2
6id1_U8e-14314532670887CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.131330.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399684.10.0zinc finger CCCH domain-containing protein 59-like isoform X3
TrEMBLA0A2K1J8J00.0A0A2K1J8J0_PHYPA; Uncharacterized protein
STRINGPP1S15_97V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-08C3H family protein