PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_13280V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 278aa    MW: 29816.3 Da    PI: 5.1446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_13280V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.7e-1965114255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aaka++aa  +l+g
  Pp3c16_13280V3.1.p  65 VYKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFSTAEMAAKAYDAAVVCLRG 114
                         7*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-3865128IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2165123IPR016177DNA-binding domain
PROSITE profilePS5103222.47165122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3165124IPR001471AP2/ERF domain
PfamPF008473.8E-1165114IPR001471AP2/ERF domain
CDDcd000186.44E-3266124No hitNo description
PRINTSPR003672.1E-96677IPR001471AP2/ERF domain
PRINTSPR003672.1E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVEKVRSQTL NAKRGGNLLA PVKTSASIQK KSTSSSSSSS SSTSLLNVPK DSTCDARSSP  60
LNAKVYKGVR MRTWGKWVSE IREPNKRSRI WLGSFSTAEM AAKAYDAAVV CLRGPSATLN  120
FPESPPSDLP LCSTPRDVQA AAAAAAAAWA PPAKSESLST TPKTLNSEDE THSQHASSCD  180
DNSIQGNLES PISATPNPTS MATDMEKWIN AEFGYLESLD EACDFPELLM QLGLANCSPL  240
DCTTPQSFFD KHIPIVNSPS SDNEDSTLYD PKLWCFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1664122160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-16661231573Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399689.10.0ethylene-responsive transcription factor ERF037-like
TrEMBLA0A2K1J8F60.0A0A2K1J8F6_PHYPA; Uncharacterized protein
STRINGPP1S15_186V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.18e-31related to AP2 9