PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_13260V3.2.p
Common NamePHYPADRAFT_176040
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 268aa    MW: 28880.3 Da    PI: 4.6892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_13260V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-175199355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +kGVr +  +g+Wv eIrdp++   ++r++lg+f tae+Aa+a++aa  +l+g
  Pp3c16_13260V3.2.p 51 FKGVRMRA-WGKWVTEIRDPTS---KARIWLGSFSTAEMAARAYDAAVVCLKG 99
                        79***998.**********854...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-3150114IPR001471AP2/ERF domain
PROSITE profilePS5103221.73350108IPR001471AP2/ERF domain
PfamPF008471.2E-95197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2851110IPR001471AP2/ERF domain
PRINTSPR003674.9E-95162IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1851110IPR016177DNA-binding domain
CDDcd000181.73E-2851110No hitNo description
PRINTSPR003674.9E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVEKRNAATL KAKRGGALLT HLTTPSSSIA KKSAFGGFDR FPCSSSQQAA FKGVRMRAWG  60
KWVTEIRDPT SKARIWLGSF STAEMAARAY DAAVVCLKGP SAPELNFPDS LPNYIPNSRS  120
PKDIQAAAAA AATASLPAAT PLAIGADSRS HEVQRQVSED WIFPSLSCIP ELHEDMTLQD  180
FEIAPEMKVD AGSSSAAMED WINNELFGGL EESSNNESDL YQELLKLAEC LDTAESSCAI  240
SQHESISGLN FSRQDNTGYD SSLWCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1345108972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.130490.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399690.10.0ethylene-responsive transcription factor ERF017-like
TrEMBLA9RL400.0A9RL40_PHYPA; Predicted protein
STRINGPP1S15_189V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.16e-27ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]