PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_13060V3.2.p | ||||||||
Common Name | PHYPADRAFT_159751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 501aa MW: 55722.3 Da PI: 9.2816 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.3e-12 | 337 | 385 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+++GVrw+ ++W +eIr g +k+++lg++ t+eeAa a++a +++ Pp3c16_13060V3.2.p 337 SRFTGVRWK--AKKWTSEIRPT---GAKKTVWLGTYNTEEEAASAYDAGIFYYH 385 689*****5..68*****9993...335*******************9888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-7 | 337 | 379 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.67E-11 | 337 | 395 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-12 | 338 | 394 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-6 | 338 | 399 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-14 | 338 | 394 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.772 | 338 | 405 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MWAPTGNRQS DGGSRIHSSR GNPTSKGHRV MDRVRVIAGS VKWSYLEMED HLKCRFWEFF 60 SGTKSRCSNK DCPTCYPATA EATRLSRARD GRFSSFLQKI RTWPRLGSCK IRDQAAHHAQ 120 QPQPAQSSQP ERMKAASFPA KHRDLSRARY LPRRFQCIVE SSIGGSKAPD SGLPNDGETP 180 YTLPVVEVEI VGCNGEPTPS VEDLDKYSYS FGSDLSFENR DNSMVKDQSL PRDVLDPLRQ 240 NSTPTPPAGQ IMSPVVADIN EVPESAGPAP LAFEYPSFSH GSPLAPTTPT PAGISNIPGS 300 FTESHGHGWH SHSQFHNRTE SSIPEVCALQ MENVPQSRFT GVRWKAKKWT SEIRPTGAKK 360 TVWLGTYNTE EEAASAYDAG IFYYHKVTAY NFHDSVKYLP ELNPALEEKA QLNFIKTQAR 420 LIAKKRAQIM ANQSSESERA CPPTEFVPRT PDTVNSRAEP ANHVSTMAES SRASPLTFFN 480 SFKRALSRDS ARPNKLRREF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17971 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367815.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367816.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367817.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367818.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367819.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367820.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367821.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
TrEMBL | A9RL52 | 0.0 | A9RL52_PHYPA; Predicted protein | ||||
STRING | PP1S15_214V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 9e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_13060V3.2.p |
Entrez Gene | 5917950 |
Publications ? help Back to Top | |||
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