PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_13060V3.1.p
Common NamePHYPADRAFT_159751
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 501aa    MW: 55722.3 Da    PI: 9.2816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_13060V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-12337385154
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         s+++GVrw+   ++W +eIr     g +k+++lg++ t+eeAa a++a   +++
  Pp3c16_13060V3.1.p 337 SRFTGVRWK--AKKWTSEIRPT---GAKKTVWLGTYNTEEEAASAYDAGIFYYH 385
                         689*****5..68*****9993...335*******************9888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-7337379IPR001471AP2/ERF domain
CDDcd000182.67E-11337395No hitNo description
SuperFamilySSF541718.5E-12338394IPR016177DNA-binding domain
SMARTSM003802.4E-6338399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-14338394IPR001471AP2/ERF domain
PROSITE profilePS5103211.772338405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MWAPTGNRQS DGGSRIHSSR GNPTSKGHRV MDRVRVIAGS VKWSYLEMED HLKCRFWEFF  60
SGTKSRCSNK DCPTCYPATA EATRLSRARD GRFSSFLQKI RTWPRLGSCK IRDQAAHHAQ  120
QPQPAQSSQP ERMKAASFPA KHRDLSRARY LPRRFQCIVE SSIGGSKAPD SGLPNDGETP  180
YTLPVVEVEI VGCNGEPTPS VEDLDKYSYS FGSDLSFENR DNSMVKDQSL PRDVLDPLRQ  240
NSTPTPPAGQ IMSPVVADIN EVPESAGPAP LAFEYPSFSH GSPLAPTTPT PAGISNIPGS  300
FTESHGHGWH SHSQFHNRTE SSIPEVCALQ MENVPQSRFT GVRWKAKKWT SEIRPTGAKK  360
TVWLGTYNTE EEAASAYDAG IFYYHKVTAY NFHDSVKYLP ELNPALEEKA QLNFIKTQAR  420
LIAKKRAQIM ANQSSESERA CPPTEFVPRT PDTVNSRAEP ANHVSTMAES SRASPLTFFN  480
SFKRALSRDS ARPNKLRREF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.179710.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367815.10.0uncharacterized protein LOC112278487
RefseqXP_024367816.10.0uncharacterized protein LOC112278487
RefseqXP_024367817.10.0uncharacterized protein LOC112278487
RefseqXP_024367818.10.0uncharacterized protein LOC112278487
RefseqXP_024367819.10.0uncharacterized protein LOC112278487
RefseqXP_024367820.10.0uncharacterized protein LOC112278487
RefseqXP_024367821.10.0uncharacterized protein LOC112278487
TrEMBLA9RL520.0A9RL52_PHYPA; Predicted protein
STRINGPP1S15_214V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.19e-09ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]