PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_12850V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 350aa    MW: 37889.8 Da    PI: 7.3123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_12850V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1763114156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr ++ +g Wv eIr p++   + r++lg+f tae+Aa+a++ a+++l+g+
  Pp3c16_12850V3.2.p  63 PVYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 114
                         68********.**********854...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1263113IPR001471AP2/ERF domain
SMARTSM003804.8E-3264127IPR001471AP2/ERF domain
PROSITE profilePS5103223.01164121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3064122IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1964121IPR016177DNA-binding domain
CDDcd000182.66E-2865121No hitNo description
PRINTSPR003672.1E-96576IPR001471AP2/ERF domain
PRINTSPR003672.1E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSDAGGKPCG NEKERSPDGN TGADSGLDDQ YDSGERMESP SSSRRQESEV RKKAKVEGDT  60
RHPVYRGVRK RPWGIWVTEI RRPKKKSRIW LGSFATAEMA ARAYDCAALA LRGNGALLNF  120
PKMANSLPRP ADLTDKSIQA AATIAANNFA QFRSEIDVYG ALPTPFFQFS SSKVDLDHLK  180
HDSPCQNPRQ SSKCTTSTFV TGARSLSQRL TSNPIGNKST IPSSQISSSS ERADEAIPHK  240
SIASTGKSQT RSKETAESLC RNRSNSGASV TDRETMEHLH HHATGGENHP PSSSPGAQQV  300
VFVDSDDMFV VGLSSLCNAM CIPPPDPEHA PEADGEEGSS TWEPHLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-18621251276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398509.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398510.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398511.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398513.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398514.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398515.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398516.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398517.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398518.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398519.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398520.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398521.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398522.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398524.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398525.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398526.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398527.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398528.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398530.10.0ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_024398531.10.0ethylene-responsive transcription factor WIN1-like isoform X1
TrEMBLA0A2K1J8C70.0A0A2K1J8C7_PHYPA; Uncharacterized protein
STRINGPP1S15_234V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-20ERF family protein