PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_1260V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 414aa    MW: 46340.4 Da    PI: 5.303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_1260V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.2e-96164032373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn...sseelaalkl..fsev 87 
                        ++lL+ cA+a++++++  +q++++ l+ ++s dg+p++R++ayf++AL+ r  +  ++   +  +   +++++    +++l + +l  ++++
  Pp3c16_1260V3.2.p  16 ERLLVLCATAIQNQNAPVVQQAVQALQSISSIDGEPNERVTAYFLRALSIRAGGLLQGQLdEDPTGHLDHPHQvqwGDRRLGFNELtnLVDM 107
                        579************************************************9995554440444444444444556677777777788**** PP

               GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                        +P+++f++++aN aIlea+eg +rvHiiDf+ s+++QWp+L++aLa+R +gpp++R+T+ + + ++    + ++ee+g+rLa  A e +vpf
  Pp3c16_1260V3.2.p 108 TPYYRFGYMAANGAILEALEGVDRVHIIDFSTSHCMQWPTLIDALADRMGGPPHVRLTVASGSLPTpprLQPTYEEVGHRLALWAGEKKVPF 199
                        ***********************************************************99977778888999******************* PP

               GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                        ef++ +++ le l++++++++ gE+laVn++l+lh+l          ++s ++ s+rd++L+l+++l+P+vv++ e++++++s ++++r+ e
  Pp3c16_1260V3.2.p 200 EFRI-LSRPLERLRTKDIDLRDGESLAVNCSLRLHYLAdesagfvseASSETIFSPRDKFLQLIRGLNPTVVTLYEEDCNTTSVDLVTRLKE 290
                        ***9.69*******************************77777766666666667************************************* PP

               GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                        a ++ +  fd l++   + s+ r  +Er+ +g++i+n++ace+++r+er e++++W +r+++  F+++p+se++++  + ++  ++ ++g++
  Pp3c16_1260V3.2.p 291 AYNHEWISFDYLATYSQNGSHGRLELERA-VGQKIENIIACENFHRIERLESKSQWAQRMQRLNFRALPVSEDVVAALREMVGDYAvGWGMK 381
                        ***************999***********.********************************************************999999 PP

               GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                        ++e++   vl Wk+++L ++S+W
  Pp3c16_1260V3.2.p 382 LDEDD-VQVLSWKGHSLAFASSW 403
                        99876.568************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.8631384IPR005202Transcription factor GRAS
PfamPF035147.6E-9416403IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEEGHVMPGV SAARAERLLV LCATAIQNQN APVVQQAVQA LQSISSIDGE PNERVTAYFL  60
RALSIRAGGL LQGQLDEDPT GHLDHPHQVQ WGDRRLGFNE LTNLVDMTPY YRFGYMAANG  120
AILEALEGVD RVHIIDFSTS HCMQWPTLID ALADRMGGPP HVRLTVASGS LPTPPRLQPT  180
YEEVGHRLAL WAGEKKVPFE FRILSRPLER LRTKDIDLRD GESLAVNCSL RLHYLADESA  240
GFVSEASSET IFSPRDKFLQ LIRGLNPTVV TLYEEDCNTT SVDLVTRLKE AYNHEWISFD  300
YLATYSQNGS HGRLELERAV GQKIENIIAC ENFHRIERLE SKSQWAQRMQ RLNFRALPVS  360
EDVVAALREM VGDYAVGWGM KLDEDDVQVL SWKGHSLAFA SSWVPYETPS KLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-471140583474Protein SHORT-ROOT
5b3h_B2e-471140529420Protein SHORT-ROOT
5b3h_E2e-471140529420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398988.10.0scarecrow-like protein 32
RefseqXP_024398989.10.0scarecrow-like protein 32
RefseqXP_024398990.10.0scarecrow-like protein 32
RefseqXP_024398991.10.0scarecrow-like protein 32
RefseqXP_024398992.10.0scarecrow-like protein 32
RefseqXP_024398993.10.0scarecrow-like protein 32
RefseqXP_024398994.10.0scarecrow-like protein 32
TrEMBLA0A2K1J6P90.0A0A2K1J6P9_PHYPA; Uncharacterized protein
STRINGPP1S144_114V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-85GRAS family protein