PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c16_1260V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 414aa MW: 46340.4 Da PI: 5.303 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 314.6 | 2.2e-96 | 16 | 403 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn...sseelaalkl..fsev 87 ++lL+ cA+a++++++ +q++++ l+ ++s dg+p++R++ayf++AL+ r + ++ + + +++++ +++l + +l ++++ Pp3c16_1260V3.1.p 16 ERLLVLCATAIQNQNAPVVQQAVQALQSISSIDGEPNERVTAYFLRALSIRAGGLLQGQLdEDPTGHLDHPHQvqwGDRRLGFNELtnLVDM 107 579************************************************9995554440444444444444556677777777788**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176 +P+++f++++aN aIlea+eg +rvHiiDf+ s+++QWp+L++aLa+R +gpp++R+T+ + + ++ + ++ee+g+rLa A e +vpf Pp3c16_1260V3.1.p 108 TPYYRFGYMAANGAILEALEGVDRVHIIDFSTSHCMQWPTLIDALADRMGGPPHVRLTVASGSLPTpprLQPTYEEVGHRLALWAGEKKVPF 199 ***********************************************************99977778888999******************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 ef++ +++ le l++++++++ gE+laVn++l+lh+l ++s ++ s+rd++L+l+++l+P+vv++ e++++++s ++++r+ e Pp3c16_1260V3.1.p 200 EFRI-LSRPLERLRTKDIDLRDGESLAVNCSLRLHYLAdesagfvseASSETIFSPRDKFLQLIRGLNPTVVTLYEEDCNTTSVDLVTRLKE 290 ***9.69*******************************77777766666666667************************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 a ++ + fd l++ + s+ r +Er+ +g++i+n++ace+++r+er e++++W +r+++ F+++p+se++++ + ++ ++ ++g++ Pp3c16_1260V3.1.p 291 AYNHEWISFDYLATYSQNGSHGRLELERA-VGQKIENIIACENFHRIERLESKSQWAQRMQRLNFRALPVSEDVVAALREMVGDYAvGWGMK 381 ***************999***********.********************************************************999999 PP GRAS 351 veeesgslvlgWkdrpLvsvSaW 373 ++e++ vl Wk+++L ++S+W Pp3c16_1260V3.1.p 382 LDEDD-VQVLSWKGHSLAFASSW 403 99876.568************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.863 | 1 | 384 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-94 | 16 | 403 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MEEGHVMPGV SAARAERLLV LCATAIQNQN APVVQQAVQA LQSISSIDGE PNERVTAYFL 60 RALSIRAGGL LQGQLDEDPT GHLDHPHQVQ WGDRRLGFNE LTNLVDMTPY YRFGYMAANG 120 AILEALEGVD RVHIIDFSTS HCMQWPTLID ALADRMGGPP HVRLTVASGS LPTPPRLQPT 180 YEEVGHRLAL WAGEKKVPFE FRILSRPLER LRTKDIDLRD GESLAVNCSL RLHYLADESA 240 GFVSEASSET IFSPRDKFLQ LIRGLNPTVV TLYEEDCNTT SVDLVTRLKE AYNHEWISFD 300 YLATYSQNGS HGRLELERAV GQKIENIIAC ENFHRIERLE SKSQWAQRMQ RLNFRALPVS 360 EDVVAALREM VGDYAVGWGM KLDEDDVQVL SWKGHSLAFA SSWVPYETPS KLA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 6e-47 | 11 | 405 | 83 | 474 | Protein SHORT-ROOT |
5b3h_B | 2e-47 | 11 | 405 | 29 | 420 | Protein SHORT-ROOT |
5b3h_E | 2e-47 | 11 | 405 | 29 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398988.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398989.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398990.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398991.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398992.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398993.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024398994.1 | 0.0 | scarecrow-like protein 32 | ||||
TrEMBL | A0A2K1J6P9 | 0.0 | A0A2K1J6P9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S144_114V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 2e-85 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c16_1260V3.1.p |