PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_1200V3.3.p

Common Name

PHYPADRAFT_167396

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 583aa MW: 63979.4 Da PI: 10.181

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_1200V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	38	2.7e-12	371	397	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++le G +C++ Pvkg+KRC+ HK Pp3c16_1200V3.3.p 371 CGILLESGLPCSALPVKGGKRCRIHKK 397 **************************5 PP
2	HRT-like	48.7	1.3e-15	532	561	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c16_1200V3.3.p 532 ICGLKLLDGTVCPDPPRPDRKRCEAHKGLR 561 8***************************99 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MPFPGGDGGH GMNPMTDFKP VNAQGKKQRM KREDHAHVKH DSSFSDWKVL VGPSDWKDHA 60 CGKAQDRFRV KNLPTSYSGS GLYELGVTPP AWLPPQRNNY PGILKPQDVV VVYLGCAESV 120 NYHLQRYGQT GAHLEGVRST RLFSAKNETA SKPGLPQLEK TRSFASECRN LSIDLAPGAD 180 GDVSTGSNGS IDNTDDLQAT SEKKRANTSD HIGNRSPVRG PCLFSEVFAL GCSIAFRWAA 240 TDSKAAADKA EFELTEVFDY AWKRGGNFRQ RSADILAKIV KGGALGSNDL PYGCFGYNSR 300 CICFFFKRSR VGVKIAARKL PDDNHRFVRS RRSNPSGGSD FFSFRYSPPL LPGKTAKSAA 360 FTKLDIPIDR CGILLESGLP CSALPVKGGK RCRIHKKISH KKPARVAHTS SPTYDSNGAL 420 PRDTNVSKNS GKTPTKPPPE HSTSCFPYRP QVQPVPGAPA EPKRRGSLSF NSWLRTSELR 480 MAKSREWAEL KTPLSPRPEG TRRSSTSYSS ILATCEESMY ESPCRSPSRR EICGLKLLDG 540 TVCPDPPRPD RKRCEAHKGL RNQMLPQSPV YSSTASLRQG FV*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MPFPGGDGGH GMNPMTDFKP VNAQGKKQRM KREDHAHVKH DSSFSDWKVL VGPSDWKDHA  60
CGKAQDRFRV KNLPTSYSGS GLYELGVTPP AWLPPQRNNY PGILKPQDVV VVYLGCAESV  120
NYHLQRYGQT GAHLEGVRST RLFSAKNETA SKPGLPQLEK TRSFASECRN LSIDLAPGAD  180
GDVSTGSNGS IDNTDDLQAT SEKKRANTSD HIGNRSPVRG PCLFSEVFAL GCSIAFRWAA  240
TDSKAAADKA EFELTEVFDY AWKRGGNFRQ RSADILAKIV KGGALGSNDL PYGCFGYNSR  300
CICFFFKRSR VGVKIAARKL PDDNHRFVRS RRSNPSGGSD FFSFRYSPPL LPGKTAKSAA  360
FTKLDIPIDR CGILLESGLP CSALPVKGGK RCRIHKKISH KKPARVAHTS SPTYDSNGAL  420
PRDTNVSKNS GKTPTKPPPE HSTSCFPYRP QVQPVPGAPA EPKRRGSLSF NSWLRTSELR  480
MAKSREWAEL KTPLSPRPEG TRRSSTSYSS ILATCEESMY ESPCRSPSRR EICGLKLLDG  540
TVCPDPPRPD RKRCEAHKGL RNQMLPQSPV YSSTASLRQG FV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397931.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2K1J6N6	0.0	A0A2K1J6N6_PHYPA; Uncharacterized protein
TrEMBL	A9T037	0.0	A9T037_PHYPA; Predicted protein
STRING	PP1S144_109V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-20	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c16_1200V3.3.p
Entrez Gene	5935183

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]