PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_1200V3.2.p | ||||||||
Common Name | PHYPADRAFT_167396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HRT-like | ||||||||
Protein Properties | Length: 554aa MW: 60896.9 Da PI: 10.1198 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 38.1 | 2.5e-12 | 342 | 368 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++le G +C++ Pvkg+KRC+ HK Pp3c16_1200V3.2.p 342 CGILLESGLPCSALPVKGGKRCRIHKK 368 **************************5 PP | |||||||
2 | HRT-like | 48.8 | 1.2e-15 | 503 | 532 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c16_1200V3.2.p 503 ICGLKLLDGTVCPDPPRPDRKRCEAHKGLR 532 8***************************99 PP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MKREDHAHVK HDSSFSDWKV LVGPSDWKDH ACGKAQDRFR VKNLPTSYSG SGLYELGVTP 60 PAWLPPQRNN YPGILKPQDV VVVYLGCAES VNYHLQRYGQ TGAHLEGVRS TRLFSAKNET 120 ASKPGLPQLE KTRSFASECR NLSIDLAPGA DGDVSTGSNG SIDNTDDLQA TSEKKRANTS 180 DHIGNRSPVR GPCLFSEVFA LGCSIAFRWA ATDSKAAADK AEFELTEVFD YAWKRGGNFR 240 QRSADILAKI VKGGALGSND LPYGCFGYNS RCICFFFKRS RVGVKIAARK LPDDNHRFVR 300 SRRSNPSGGS DFFSFRYSPP LLPGKTAKSA AFTKLDIPID RCGILLESGL PCSALPVKGG 360 KRCRIHKKIS HKKPARVAHT SSPTYDSNGA LPRDTNVSKN SGKTPTKPPP EHSTSCFPYR 420 PQVQPVPGAP AEPKRRGSLS FNSWLRTSEL RMAKSREWAE LKTPLSPRPE GTRRSSTSYS 480 SILATCEESM YESPCRSPSR REICGLKLLD GTVCPDPPRP DRKRCEAHKG LRNQMLPQSP 540 VYSSTASLRQ GFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397931.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A9T037 | 0.0 | A9T037_PHYPA; Predicted protein | ||||
STRING | PP1S144_109V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 9e-21 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_1200V3.2.p |
Entrez Gene | 5935183 |
Publications ? help Back to Top | |||
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