PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_9180V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1163aa MW: 126230 Da PI: 5.5659

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_9180V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	716	766	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c15_9180V3.1.p 716 EKTIGLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 766 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	698	786	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-25	719	766	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-22	1053	1147	No hit	No description
SMART	SM00666	2.4E-14	1064	1146	IPR000270	PB1 domain
PROSITE profile	PS51745	22.618	1064	1146	IPR000270	PB1 domain
Pfam	PF00564	3.0E-14	1065	1143	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.8E-21	1065	1144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MPPSEREVAM GISTGDIVSK FVVDDGLLSD FMDLDSLSDQ LDEEESWMDG ASGSSSCDFT 60 LTPYSMASSD NCYASFSPPS PVTSHSSSLY SSQTPSAAGL DGLQLLQQVL DGAPSAFPPP 120 LSPSPVGSGN IDMLLSDQNL SSMENVVDYN DLFEKSRVNS SFLAMPSEDD EDEAEEKSGL 180 SEEEKVVGEG ETRKRTLTRA LSSPPMSFRD RLLQAVRYIG RLRMDVLVQV WMPVVQQTSS 240 SSSKRVLITR DQPFVLEQKN DKLSNFRSAS EDYEFAADAG ITGMGLPGRV FVHQMPEWSP 300 NVQMYNCQEY LRHVEAQRCD VRGSLALPIM DPVSSQCVAV IELVGCTEKI QFHSDVDIVS 360 RAVQAVHLST VNSLETPVPE RLSQGRQAVL NEIAEVLTAV CETHKLPLAQ TWVPTYRYGS 420 MDIKVHQSGS KRMRSENGSG LSRNTSSSPC SGEILRTGDG PCYVSDGRIW GFRRACLEHS 480 LEKGQGVAGK AFETNQPNFD SDVKIHCKTE YPLAHHAKCF GLGAAVAIRL RSIRTGNDDF 540 ILEFFLPSTC VESKEQQLLL NSLSITMQRT CRSLRTITDE EEKEELHIAG NGNVLVKAEA 600 KEEPIDGDCV FHPRTPYGSQ EGISLISSGA KGEEQATHCQ LPHPSLISQL SLQRNSNWQS 660 SYLLNPSESQ QHASKSEDSD PLVNHVLGLD RLGCSNAAQV AASQRRKLDR RRGTTEKTIG 720 LSVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVSRSL KKLQGVIDSV 780 QGADGALRIN ALTGDITTAS MAADNGSGHA GSDGSCAKSK WSVSWSTPAP RNRDLEDHKV 840 RGGTLLLPKE EDRKKHDSCS PQSVLMSILS SPETKPSRHW HTNEKSAGVS AEGNDLAVGH 900 DSGFRGASTL SPGSNLTIDT GLAVVCDAVT AHHDLLGARS QQSSPSSGSY DDIAPPTSKV 960 DSRGSGLPES KTGSGCQNQV HDSASAEVAI KDVCKKNKSP EVGVSSSSLN EDQEQEREVM 1020 GGSGTSNSPR FGSSTAQGTS DCSSPSSAGN PSSHMKTWPA HSDVITMKVT YNEDTVRFKL 1080 SSDKSYLDLR DQVNRRLKLA GLKFDLKYLD DDEEWMLLAC DADLQECLEV MRVSRRNAVK 1140 LMVRCNVSSS VETSCADDKT LS*

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MPPSEREVAM GISTGDIVSK FVVDDGLLSD FMDLDSLSDQ LDEEESWMDG ASGSSSCDFT  60
LTPYSMASSD NCYASFSPPS PVTSHSSSLY SSQTPSAAGL DGLQLLQQVL DGAPSAFPPP  120
LSPSPVGSGN IDMLLSDQNL SSMENVVDYN DLFEKSRVNS SFLAMPSEDD EDEAEEKSGL  180
SEEEKVVGEG ETRKRTLTRA LSSPPMSFRD RLLQAVRYIG RLRMDVLVQV WMPVVQQTSS  240
SSSKRVLITR DQPFVLEQKN DKLSNFRSAS EDYEFAADAG ITGMGLPGRV FVHQMPEWSP  300
NVQMYNCQEY LRHVEAQRCD VRGSLALPIM DPVSSQCVAV IELVGCTEKI QFHSDVDIVS  360
RAVQAVHLST VNSLETPVPE RLSQGRQAVL NEIAEVLTAV CETHKLPLAQ TWVPTYRYGS  420
MDIKVHQSGS KRMRSENGSG LSRNTSSSPC SGEILRTGDG PCYVSDGRIW GFRRACLEHS  480
LEKGQGVAGK AFETNQPNFD SDVKIHCKTE YPLAHHAKCF GLGAAVAIRL RSIRTGNDDF  540
ILEFFLPSTC VESKEQQLLL NSLSITMQRT CRSLRTITDE EEKEELHIAG NGNVLVKAEA  600
KEEPIDGDCV FHPRTPYGSQ EGISLISSGA KGEEQATHCQ LPHPSLISQL SLQRNSNWQS  660
SYLLNPSESQ QHASKSEDSD PLVNHVLGLD RLGCSNAAQV AASQRRKLDR RRGTTEKTIG  720
LSVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVSRSL KKLQGVIDSV  780
QGADGALRIN ALTGDITTAS MAADNGSGHA GSDGSCAKSK WSVSWSTPAP RNRDLEDHKV  840
RGGTLLLPKE EDRKKHDSCS PQSVLMSILS SPETKPSRHW HTNEKSAGVS AEGNDLAVGH  900
DSGFRGASTL SPGSNLTIDT GLAVVCDAVT AHHDLLGARS QQSSPSSGSY DDIAPPTSKV  960
DSRGSGLPES KTGSGCQNQV HDSASAEVAI KDVCKKNKSP EVGVSSSSLN EDQEQEREVM  1020
GGSGTSNSPR FGSSTAQGTS DCSSPSSAGN PSSHMKTWPA HSDVITMKVT YNEDTVRFKL  1080
SSDKSYLDLR DQVNRRLKLA GLKFDLKYLD DDEEWMLLAC DADLQECLEV MRVSRRNAVK  1140
LMVRCNVSSS VETSCADDKT LS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.18014	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397373.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A2K1JCK3	0.0	A0A2K1JCK3_PHYPA; Uncharacterized protein
STRING	PP1S250_18V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-130	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c15_9180V3.1.p