PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_8710V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 472aa    MW: 53328.6 Da    PI: 5.37
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_8710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.4e-91744672373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsev 87 
                        ++lL+ cA+a++++d + ++++++ l++ +s +g+p +R++ayf++AL  r ++ ++ +++  ++set++++    ++++ + ++l  ++++
  Pp3c15_8710V3.2.p  74 EQLLVICATAIKQNDSSVVEKAVSALKKVSSIQGEPSERATAYFLKALLLRRSS-MPDVSNFTSSSETTNSDevqwTERRYSLTELtrLVDL 164
                        589************************************************997.999999998888887775554444444444488**** PP

               GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                        +P+++f++ + N a+lea+eg e++Hi+Df+ ++G+QWp++++aL++R++gpp s+R+T ++s+ ++    ++++ee+g+rL+k+A+  ++p
  Pp3c15_8710V3.2.p 165 TPYFRFGYTASNGALLEAFEGVEQIHILDFSTTHGMQWPTFIEALSDREHGPPsSFRLTLLSSSVPFpprLQTTYEEVGQRLSKYARLRNIP 256
                        *************************************************888879********99889988999****************** PP

               GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............desvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253
                        f+f+v +++ l++l+ ++Lr++++E+l Vnl+l++h+l             ++ ++ +s  + d++L l++ l+P+vv++ e+++d++s+ F
  Pp3c15_8710V3.2.p 257 FDFDV-LSQPLANLSSSDLRLREEEVLGVNLSLRIHHLSeestdesspresQQYGAPQSlcPGDKFLYLIRCLNPTVVTLYEEDCDTSSSCF 347
                        *****.6********************************7777777776652222222256789**************************** PP

               GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                        ++r+ ++  y ++ fd l++  p+e++er+  E+  +g++i+n+vaceg +r +r e++++W +r+++  F+  p++e++ +q + ++ +++
  Pp3c15_8710V3.2.p 348 VKRVEQSYAYEWMPFDFLATIWPSENSERQEHEKN-VGKKIENIVACEGLNRLNRLESKKQWLRRMNKLRFRIQPVREDVKSQLQDVVDHHN 438
                        ***********************************.******************************************************** PP

               GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaW 373
                         ++g++ +ee ++  l Wk++pL++ S+W
  Pp3c15_8710V3.2.p 439 tGWGMKNDEETNTQSLLWKGNPLTFSSSW 467
                        9**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.50647447IPR005202Transcription factor GRAS
PfamPF035142.2E-8874467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRYAMQGETY LSSTGTCSNR LQHVSSSNSE GLTHSGGTSS SMNNFSQQRQ LSIGSVTTES  60
SEMSNFVVEG MTPEQLLVIC ATAIKQNDSS VVEKAVSALK KVSSIQGEPS ERATAYFLKA  120
LLLRRSSMPD VSNFTSSSET TNSDEVQWTE RRYSLTELTR LVDLTPYFRF GYTASNGALL  180
EAFEGVEQIH ILDFSTTHGM QWPTFIEALS DREHGPPSSF RLTLLSSSVP FPPRLQTTYE  240
EVGQRLSKYA RLRNIPFDFD VLSQPLANLS SSDLRLREEE VLGVNLSLRI HHLSEESTDE  300
SSPRESQQYG APQSLCPGDK FLYLIRCLNP TVVTLYEEDC DTSSSCFVKR VEQSYAYEWM  360
PFDFLATIWP SENSERQEHE KNVGKKIENI VACEGLNRLN RLESKKQWLR RMNKLRFRIQ  420
PVREDVKSQL QDVVDHHNTG WGMKNDEETN TQSLLWKGNP LTFSSSWVPA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-396546925420Protein SHORT-ROOT
5b3h_E6e-396546925420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397576.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397577.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397578.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397579.10.0scarecrow-like protein 32 isoform X1
TrEMBLA9TTW10.0A9TTW1_PHYPA; Predicted protein
STRINGPP1S318_4V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24991534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.15e-81GRAS family protein