PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_7790V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 651aa    MW: 71506.6 Da    PI: 7.0226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_7790V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+lv++++++G g+W+++++  g+ R++k+c++rw +yl
  Pp3c15_7790V3.10.p 14 KGLWSPEEDEKLVRYITKHGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding461.2e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++ E+ l++d+++ lG++ W+ Ia  ++ gRt++++k++w++
  Pp3c15_7790V3.10.p  67 RGVFSPAEENLIIDLHAVLGNR-WSQIATQLP-GRTDNEIKNFWNS 110
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-26664IPR009057Homeodomain-like
PROSITE profilePS5129425.483965IPR017930Myb domain
SuperFamilySSF466894.87E-2911108IPR009057Homeodomain-like
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
PfamPF002494.1E-161461IPR001005SANT/Myb domain
CDDcd001674.31E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.3266116IPR017930Myb domain
SMARTSM007178.1E-1466114IPR001005SANT/Myb domain
PfamPF002494.0E-1367110IPR001005SANT/Myb domain
CDDcd001676.28E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MGRHSCSHKQ KLKKGLWSPE EDEKLVRYIT KHGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGVF SPAEENLIID LHAVLGNRWS QIATQLPGRT DNEIKNFWNS CIKKKLRNIG  120
IDPNTHKLVN GESNSNLEGS SSIDPPHERP LNSSPLLTEA PPSQCTSQAA GLVRLPIQEC  180
KLQAPRMFST SYMESDGMYN PTRNPHFSSN GSLTDHQKYL ELIRTNSSPG SCMSTYPLST  240
DNLLESLRLC GENKGLQLPP KVPPFSPPTG HSSSHFDSNS MISCSFPISG HDSDHHGSIK  300
PDLATAVPAA HNPVFWILQG SDRSSQAHGQ ASMSSGLQEM LQHSQQFFKS SRDQNGASTP  360
EQFPEIEMRL GPFTSYSRIA SLRSNYAGSV DKGDLNSMTA CFQLPHFGAS SVSNHIICPR  420
APENSVNARG AYHSSLRSYP FKGTQVEVEK ALTSGEVAAG GRHEQYHWDQ GISASSSTSN  480
NTEISMFETS TLFWGGGLVE KSDAAKQDQL MLPRSVKIDQ SSVAPATQAC SDHSGGFSPD  540
QSDGDTVMKW CSDQLMPTPE QPVFSAATCG HHTLYQENHQ SQTRQGKVDQ SSPDQSLVQD  600
DQSFSNSRVS MHWQNMHQGG QDMYDPSVGD RIIAPMSPEL QRMAAVLDQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396077.10.0transcription factor GAMYB-like
RefseqXP_024396078.10.0transcription factor GAMYB-like
RefseqXP_024396079.10.0transcription factor GAMYB-like
RefseqXP_024396080.10.0transcription factor GAMYB-like
RefseqXP_024396081.10.0transcription factor GAMYB-like
RefseqXP_024396083.10.0transcription factor GAMYB-like
TrEMBLA0A2K1JCF50.0A0A2K1JCF5_PHYPA; Uncharacterized protein
STRINGPP1S189_29V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-79myb domain protein 55