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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pp3c15_6330V3.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 249aa MW: 27210.9 Da PI: 7.9414 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 27 | 1e-08 | 19 | 59 | 8 | 55 |
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
+C k hA lG vDGC+ f + +++++ C ACgCH +FH +
Pp3c15_6330V3.1.p 19 KCTKLHAH-LG-PGVDGCQLFDGE-----NSSSMLCGACGCHMSFHVK 59
68888874.44.579*****9887.....6789*************77 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51523 | 15.399 | 17 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 2.2E-5 | 19 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 249 aa Download sequence Send to blast |
MVTGYNLDRV MIYSRNRGKC TKLHAHLGPG VDGCQLFDGE NSSSMLCGAC GCHMSFHVKL 60 NLGGSSHDLE NHELLDLEPG LKRCKMSLDA SPAESVGDNI DSNPDLEVNS GPCPEDLLRV 120 FRSRKSEGQP PVFLQPVLIK PGRDEIRVNS SAPLYTETSL YTKLCSKLKL IQAGHPEDIH 180 GKFSIVHDDV NGYRVYCGGC NRHYGIPKPG YSLGNFERGH LASKRHKDVG AADGRMKVQK 240 VRDFFAAG* |
| Expression -- UniGene ? help Back to Top | ||||||
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| UniGene ID | E-value | Expressed in | ||||
| Ppa.12628 | 0.0 | gametophore| protonema | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024396967.1 | 0.0 | uncharacterized protein LOC112292581 | ||||
| Refseq | XP_024396968.1 | 0.0 | uncharacterized protein LOC112292581 | ||||
| TrEMBL | A0A2K1JC77 | 0.0 | A0A2K1JC77_PHYPA; Uncharacterized protein | ||||
| STRING | PP1S291_41V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c15_6330V3.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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