PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_4760V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 481aa    MW: 51730.9 Da    PI: 6.7624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_4760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11404449655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L++l+P+     +k  + +++L ++veY+ksLq
  Pp3c15_4760V3.1.p 404 SIAERVRRTKISERMKRLQDLVPNM----DKQTNTSDMLDETVEYVKSLQ 449
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589398448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15401463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-12402453No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16403468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-13404454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8404449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MCGQAVAIMD GSVSAIMQSH RGISHAYYPS GMGAVDEEIS AMLQSGHHSC IGQGSLAGVM  60
APAVTAGLDH FPYNLYNQGG YVGNHSRPVS QMQRSTSMPG GGLRDGPTHV GSPPQHRGSP  120
PQSRPAFNME DKYVLESRSE VLDASILRNG SNYGVVYENS VPSSMTLSMP VLHHYHSAPA  180
NSVLADTNEE QIGNTVMSSM FTGDGLNSIT ENMDVERMGS GNSNPNEFEH YLAPENDFSG  240
QAAFPSLRKE VGTPDSFGST SKSSKNGLFS QTSLPSAGLS QLNSAVQDRM AENGSGKSSS  300
RDSDDNNHLI NGYTALIYTQ EDFTWKSPTS PAKRQRGLDG DSETSSGSAE GSTYRNCQHS  360
GLVRHMSLPS TNGGPNSPGL EDNHYGAVPM RTRAKRGCAT HPRSIAERVR RTKISERMKR  420
LQDLVPNMDK QTNTSDMLDE TVEYVKSLQR KVQELSDTVA RLKADASQRA KNSNNNNSSN  480
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.40370.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396891.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024396892.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024396893.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024396894.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024396895.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024396896.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2K1JBY90.0A0A2K1JBY9_PHYPA; Uncharacterized protein
STRINGPP1S83_128V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-34bHLH family protein