PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_4190V3.8.p
Common NamePHYPADRAFT_165110
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 320aa    MW: 35715.8 Da    PI: 6.5388
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_4190V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1538115170
           trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                        rW+k+e+l++iea+r+ e ++++++         + ++W+ vs+ +r+ g+ r  k+C+++w nl +++kki e+ k 
  Pp3c15_4190V3.8.p  38 RWSKHETLVMIEAKRKHELDIQQANglkgrtqlTDVNKWDLVSASCRAVGIDRDGKMCRKRWFNLLTEFKKILEWCKT 115
                        8*********************9877777788799*************************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.02731103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.4E-532104IPR009057Homeodomain-like
PfamPF138373.6E-1037117No hitNo description
SuperFamilySSF466898.88E-538105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEAERNAIVC ITAPDELDDG MREKLSVSPK AKRVASPRWS KHETLVMIEA KRKHELDIQQ  60
ANGLKGRTQL TDVNKWDLVS ASCRAVGIDR DGKMCRKRWF NLLTEFKKIL EWCKTNGFED  120
FWNMSGDERR EKKLPTGFDQ EIYLAMESFS KSPSGMLPDE SGSRGATDDG MFLEIEQDVQ  180
PAEDAQHLEN GTMPVELGAG NGLRIPSVVP EPLISRGMSP ERPRNLKKRK LPCGPVPGEA  240
DPKDPYIAIL ENTSKSLQAA FTETIQAQLK VYSRTVHAQI EAQKQENALE RALRKEQGDK  300
LIGVLTTLVD ALSKIADKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.125400.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397197.10.0trihelix transcription factor ASR3-like
RefseqXP_024397199.10.0trihelix transcription factor ASR3-like
RefseqXP_024397200.10.0trihelix transcription factor ASR3-like
TrEMBLA9SIR60.0A9SIR6_PHYPA; Predicted protein
STRINGPP1S83_71V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-27Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]