PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_4190V3.4.p | ||||||||
Common Name | PHYPADRAFT_165110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 320aa MW: 35715.8 Da PI: 6.5388 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49 | 1.6e-15 | 38 | 115 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW+k+e+l++iea+r+ e ++++++ + ++W+ vs+ +r+ g+ r k+C+++w nl +++kki e+ k Pp3c15_4190V3.4.p 38 RWSKHETLVMIEAKRKHELDIQQANglkgrtqlTDVNKWDLVSASCRAVGIDRDGKMCRKRWFNLLTEFKKILEWCKT 115 8*********************9877777788799*************************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.027 | 31 | 103 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-5 | 32 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.6E-10 | 37 | 117 | No hit | No description |
SuperFamily | SSF46689 | 8.88E-5 | 38 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEAERNAIVC ITAPDELDDG MREKLSVSPK AKRVASPRWS KHETLVMIEA KRKHELDIQQ 60 ANGLKGRTQL TDVNKWDLVS ASCRAVGIDR DGKMCRKRWF NLLTEFKKIL EWCKTNGFED 120 FWNMSGDERR EKKLPTGFDQ EIYLAMESFS KSPSGMLPDE SGSRGATDDG MFLEIEQDVQ 180 PAEDAQHLEN GTMPVELGAG NGLRIPSVVP EPLISRGMSP ERPRNLKKRK LPCGPVPGEA 240 DPKDPYIAIL ENTSKSLQAA FTETIQAQLK VYSRTVHAQI EAQKQENALE RALRKEQGDK 300 LIGVLTTLVD ALSKIADKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12540 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397197.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024397199.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024397200.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A9SIR6 | 0.0 | A9SIR6_PHYPA; Predicted protein | ||||
STRING | PP1S83_71V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 6e-27 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_4190V3.4.p |
Entrez Gene | 5929469 |
Publications ? help Back to Top | |||
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