PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_3620V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 191aa    MW: 21180.6 Da    PI: 4.2251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_3620V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19761155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GVr ++ +g+Wv+eIr+p   g ++ r++lg+f +aeeAa a++aa ++l+g
  Pp3c15_3620V3.1.p  7 SSYRGVRMRR-WGKWVSEIREPQRSGsRTNRIWLGSFRSAEEAAHAYDAALLCLRG 61
                       67*****998.**********97788788*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-20769IPR016177DNA-binding domain
CDDcd000182.52E-25770No hitNo description
PfamPF008477.9E-12761IPR001471AP2/ERF domain
PROSITE profilePS5103222.431869IPR001471AP2/ERF domain
SMARTSM003802.0E-32875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-29870IPR001471AP2/ERF domain
PRINTSPR003672.0E-9920IPR001471AP2/ERF domain
PRINTSPR003672.0E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSNNAGSSYR GVRMRRWGKW VSEIREPQRS GSRTNRIWLG SFRSAEEAAH AYDAALLCLR  60
GSTANLNFPN FNYRLPAGTP GRYTTREIQA AAAAAAAQSA GRPFSYNNFM SPDSSSDSED  120
EVEDITYNES TSNTNDGTPS QPAYNDGWRS FDDNPYNQVD EMARGLMIRP PNNDSDDSDD  180
DNDDEDPPLW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16669363ATERF1
3gcc_A1e-16669363ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397267.11e-137ethylene-responsive transcription factor ERF039-like
RefseqXP_024397268.11e-137ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2K1JBR21e-135A0A2K1JBR2_PHYPA; Uncharacterized protein
STRINGPP1S83_10V6.11e-135(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-19ERF family protein