PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24790V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 885aa    MW: 94838.8 Da    PI: 7.8301
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24790V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15399458155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c15_24790V3.4.p 399 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 458
                         78*******************655454478446*************************98 PP
2AP245.61.8e-14503552355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c15_24790V3.4.p 503 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDLAAIKFRG 552
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-17399468IPR016177DNA-binding domain
PfamPF008475.3E-12399458IPR001471AP2/ERF domain
CDDcd000181.24E-20399468No hitNo description
SMARTSM003804.6E-28400472IPR001471AP2/ERF domain
PROSITE profilePS5103219.467400466IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16400467IPR001471AP2/ERF domain
PRINTSPR003679.7E-6401412IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17501562IPR016177DNA-binding domain
CDDcd000186.11E-23501562No hitNo description
SMARTSM003806.6E-32502566IPR001471AP2/ERF domain
PROSITE profilePS5103219.111502560IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17502560IPR001471AP2/ERF domain
PfamPF008472.7E-10503552IPR001471AP2/ERF domain
PRINTSPR003679.7E-6542562IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MKSMNHWLRF SPQFPPLALD TVKQQADPIS YQPRSTNSLI LSSMSQNHSN NIGGFQNSAN  60
SCYNPLRSGG DGDNSNSAQG LEMMRSDGSL CIMEALTRSH SAAEHWPQQR GMQSDGGIQQ  120
HTLLTADQLS RLTRNGGAGD QQLTGSHSHY ELQSSGTETR DGPKLEDFLG GASLGGQYSD  180
REAQQQQLDS LYYNAGNPGA SYGRDGQSRI NVNLPYSSQT GGGSLHDVPS SYHVAYGRVQ  240
DQSSLTNPQG YEHQQSRVQH ELQESNLLAG SRLHPQNLLQ AALDQSATAE LLSDCALQLP  300
SGGSPNPGSE DYGLKTWLRH QAAAEKRVLN GLSGLQPLTL SMSAGSHQSN GSAAVHGGGQ  360
LPIAESPTGP EPRKRGAGRA GSKEPSPRKS IDTFGQRTSV YRGVTRHRWT GRYEAHLWDN  420
SCRKEGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGPN TTINFPLSTY EAELEEMKNM  480
SRQEYVASLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTYSTQEEAA  540
EAYDLAAIKF RGINAVTNFD ISRYDAGRIQ QAGASGHHGA EAMKAAKEAE VAAMQSRVGA  600
TASQMHSHSQ SQVNEEQQTS THSTGGPGSQ LTSEVLSGQG GLSKNLMEWQ MLYQQQARNS  660
WESSSREESQ RARLGFGVDS MRAPSTQSKF PPPTNGMLLR NLMGLEALPQ DQNRRGGESS  720
CSGNGGLLGQ GMPSSGSMMS TSGFEGGGSS AYQSGDGRAL NSPPMSNSAY QQQGQQGGQG  780
GQGSVDRGAV VDSPKNSVGE SEEASSKSSA YDPVLQGELS RSGILYMSPG SGSQGKMGSY  840
VESNPMSPWI SSNAATVQGL AGRSNLSMGG HMGSGPIFAH SWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.146210.0protonema| sporophyte
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755920.0AB675592.1 Physcomitrella patens APB4 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396603.10.0uncharacterized protein LOC112292401 isoform X1
TrEMBLA0A2K1JEH10.0A0A2K1JEH1_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-117AP2 family protein