PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24050V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 441aa    MW: 47283.8 Da    PI: 8.339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24050V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-06142166226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         kt++C  f+ t  C+yG+ C+F H+
  Pp3c15_24050V3.2.p 142 KTKPCTKFFSTSGCPYGEGCHFLHC 166
                         9***********************8 PP
2zf-CCCH29.31.4e-09224250127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC+ f+    C++Gd+C+FaHg+
  Pp3c15_24050V3.2.p 224 YKTRLCNKFSTPEGCRFGDKCHFAHGE 250
                         9************************96 PP
3zf-CCCH32.31.6e-10406430126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ GtC + drC+FaHg
  Pp3c15_24050V3.2.p 406 FKTKLCENFSQ-GTCTFADRCHFAHG 430
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9101126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.375104127IPR000571Zinc finger, CCCH-type
PfamPF146080.13104125No hitNo description
Gene3DG3DSA:4.10.1000.101.9E-6105131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6140166IPR000571Zinc finger, CCCH-type
SMARTSM003560.24140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915140168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-7141165IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4142166IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727223251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8224254IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6224250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-15224255IPR000571Zinc finger, CCCH-type
SMARTSM003222.9E-12319389IPR004087K Homology domain
PROSITE profilePS5008415.032320384IPR004088K Homology domain, type 1
SuperFamilySSF547913.51E-13323394IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-14323389IPR004088K Homology domain, type 1
CDDcd001052.37E-14323384No hitNo description
PfamPF000132.7E-11324385IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-15402436IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8404436IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6405431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61405432IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7406430IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
METVWGLIMG KETQQPVLTL FQASYEQNPK LLCIKYQELA RELIRKLELA KIQTTRKGDM  60
GSAAYEPALK KARIFSVTPL SVDENGFGNS SGVSGQDQVN GDLDCRRFGT PEGCPYGTKC  120
RFKHGPADER QIEQPVSALG SKTKPCTKFF STSGCPYGEG CHFLHCVPGG IAALGLMPLG  180
VAVGTPTALT PTSGMRTVMG GFGPNSSTPL PGGSPDPSVT VGGYKTRLCN KFSTPEGCRF  240
GDKCHFAHGE SDLRPSNVRS NGVDHLGNCS YQNWLSYMQE AAYANGGTHL LPPVATAIYY  300
GEPTPPGVMP ATAAGFGLNS GNLKMSIEAV LAGAIIGKAG ANVKQISRLT GCKLTIRDHE  360
SNASMRNVEM EGTYEQIERA SEMVRQFLSH KEVVPQRVAA IASHNFKTKL CENFSQGTCT  420
FADRCHFAHG TSELRPLTRS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396650.10.0zinc finger CCCH domain-containing protein 14-like isoform X3
TrEMBLA0A2K1JEE50.0A0A2K1JEE5_PHYPA; Uncharacterized protein
STRINGPP1S66_196V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-38C3H family protein