PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_21310V3.2.p

Common Name

PHYPADRAFT_173392

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 590aa MW: 65605.3 Da PI: 10.3835

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_21310V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	37.8	3.3e-12	359	387	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv+l++G vC++ P kgRKRC H +mR Pp3c15_21310V3.2.p 359 CGVLLDNGLVCNALPQKGRKRCPIHVDMR 387 *************************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	7.61E-4	79	103	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MALRLKREDY DSVKHDRCFS EWTILVGPSD WKEQATGREA TDRFRSRNLP SPTGGSGIYE 60 LGVTLPAWKT VDRHNEHGIV KSEDVIVVYV GHADNIRKRL QRYGQAGAHL EGTRSLNSSN 120 FSAPTKSLSF LSPNKPSRSS SVQFEDMHMS NGEESIVNKL RHRSDSDRHI SSNGRRHKNI 180 ERQPSNFNIS IPVAEPVFSA DSGARGSPRG PRLFSEVFAL GCSIAYRWSS TKTKDVAEFL 240 VSELTDAFDY AWNRGGNSDV RSQDILGKIV LGKRGYGSAC CSINNSKWSR LVFKRKIVGI 300 KILGAHKPLE ARSRRRSGQR GIGGGLYLVL KKSPHMMIMG GKSAKHCEFT KIDIPVDRCG 360 VLLDNGLVCN ALPQKGRKRC PIHVDMRKLR QRKSSQVAAQ DSRSGSLASD SYSIDSCSMD 420 SHNSRGIPAR SAPSSPCFPF LTTKKMPKAP EDSRKRGSVS FNTWLSKGEI LKVKSFEWLL 480 AMEEIKGRGN NNNDCSTSPI LKPEVLSPDT KPNEENPVRV SRISLNLSPV METVREQPTE 540 QDVYSPTVDN GMPHTIVSWR SSVRWPPASL RDSYVTTNNP SQFPRISFS*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MALRLKREDY DSVKHDRCFS EWTILVGPSD WKEQATGREA TDRFRSRNLP SPTGGSGIYE  60
LGVTLPAWKT VDRHNEHGIV KSEDVIVVYV GHADNIRKRL QRYGQAGAHL EGTRSLNSSN  120
FSAPTKSLSF LSPNKPSRSS SVQFEDMHMS NGEESIVNKL RHRSDSDRHI SSNGRRHKNI  180
ERQPSNFNIS IPVAEPVFSA DSGARGSPRG PRLFSEVFAL GCSIAYRWSS TKTKDVAEFL  240
VSELTDAFDY AWNRGGNSDV RSQDILGKIV LGKRGYGSAC CSINNSKWSR LVFKRKIVGI  300
KILGAHKPLE ARSRRRSGQR GIGGGLYLVL KKSPHMMIMG GKSAKHCEFT KIDIPVDRCG  360
VLLDNGLVCN ALPQKGRKRC PIHVDMRKLR QRKSSQVAAQ DSRSGSLASD SYSIDSCSMD  420
SHNSRGIPAR SAPSSPCFPF LTTKKMPKAP EDSRKRGSVS FNTWLSKGEI LKVKSFEWLL  480
AMEEIKGRGN NNNDCSTSPI LKPEVLSPDT KPNEENPVRV SRISLNLSPV METVREQPTE  540
QDVYSPTVDN GMPHTIVSWR SSVRWPPASL RDSYVTTNNP SQFPRISFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8553	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397333.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2K1JDY4	0.0	A0A2K1JDY4_PHYPA; Uncharacterized protein
STRING	PP1S454_5V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-22	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c15_21310V3.2.p
Entrez Gene	5948447

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]