PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_1990V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 324aa    MW: 35179.2 Da    PI: 7.8501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_1990V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202069255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++ a+++l+g
  Pp3c15_1990V3.1.p 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 69
                       69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-212077IPR016177DNA-binding domain
SMARTSM003801.1E-362083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-312077IPR001471AP2/ERF domain
PfamPF008472.2E-132069IPR001471AP2/ERF domain
CDDcd000182.04E-322077No hitNo description
PROSITE profilePS5103222.8132077IPR001471AP2/ERF domain
PRINTSPR003677.0E-112132IPR001471AP2/ERF domain
PRINTSPR003677.0E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAARDEKAST KSSQAYQGVH FRGVRKRPWG RFAAEIRDPW KKTRVWLGTF DTAEEAARAY  60
DSAARALRGS KAKTNFACPP SSDDQSTSHS STVESWSTLP SCQNVCQPHH QHHQLLKNHP  120
NSLNCHQLYG PSVASEADSW RTSLDLNLSA MVPHDPDHQV EEMAQVLNES ISAGRSYVLP  180
GNAGELSQSS KRHSSTPIQT LFQDTMGKTS YSAKKPSILA VPPVRTSAIP WSLGARWDQN  240
VALPTGIQPT LLTPGSAVSP ETRACSSDCD SSSSVIVNSE SPEIVATPQQ RTKPVLRRNF  300
PFLLDLNSPP CLDEEPAVTA VGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211776262ATERF1
3gcc_A3e-211776262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99620.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396065.10.0ethylene-responsive transcription factor 7-like
TrEMBLA0A2K1JBL70.0A0A2K1JBL7_PHYPA; Uncharacterized protein
STRINGPP1S124_33V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-23ERF domain protein 12