PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_19246V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 20206.4 Da PI: 5.9798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.2 | 5.3e-20 | 32 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WTteE+ellv+a+ +G++ W++Ia++++ gRt++++k++w+ Pp3c15_19246V3.1.p 32 GWTTEEEELLVHAHSTFGNR-WSAIAKMLP-GRTDNSIKNHWH 72 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.553 | 1 | 24 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.49E-27 | 9 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 10 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.5 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-17 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 32 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-13 | 33 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 38 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MFTVGMEQTD RSGKQCRERW VNHLHPDIRK EGWTTEEEEL LVHAHSTFGN RWSAIAKMLP 60 GRTDNSIKNH WHATLRKKDR HGQLRPSLLR EYILKKTAAH DMSVKAWAIF PLPQSADNNE 120 DNMSDAYVAN SEKENRDAIQ NMQVDDTTTL HNCYTKDLAE EEANGEVHLV DEVVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 11 | 78 | 37 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 11 | 78 | 37 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 11 | 78 | 37 | 104 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395976.1 | 1e-116 | uncharacterized protein LOC112292072 | ||||
TrEMBL | A0A2K1JDQ3 | 1e-129 | A0A2K1JDQ3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S206_27V6.1 | 1e-116 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-30 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_19246V3.1.p |