PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_17620V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 765aa    MW: 85550.5 Da    PI: 6.2946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_17620V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.42.5e-1033877542373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +elL++cA avs+g+++ a+++La+l+ l+sp gd mqR+a+yf+eAL a++++++++ly  ++ ++ s    ++ l+a++ +++ +P++k
  Pp3c15_17620V3.2.p 387 TELLYRCAFAVSQGKTHSATEYLAELRSLSSPFGDYMQRVAHYFMEALVAKMSGTGEQLYTVITNNHPS---AATMLKAFRQYVDRCPYIK 474
                         789*********************************************************999888887...8999*************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         ++h+   ++ l+a+eg++rvHii ++i++G+ Wp+L+q L++Rpegpp++RiTgv+ p +g     ++e+tg+rLa+fA+  +vpfef++ 
  Pp3c15_17620V3.2.p 475 VGHFFETKMTLDAFEGATRVHIIHYGIQYGVEWPTLIQHLSKRPEGPPHFRITGVDVPYPGedPCWKIEQTGRRLAEFAKMWNVPFEFHA- 564
                         *********************************************************9999878889***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a ++e+++ ++++++++E+laV   ++lh++ld sv  +s+r+ +L+ ++sl+Pkv+ +   +a +n++ F++rf e++++ysa+f+ +e
  Pp3c15_17620V3.2.p 565 LAGKWESFTARDFNLRSDEVLAVI-THRLHNILDVSVLGASPRELLLRRIRSLNPKVFFMFVDNAACNGPFFMTRFRESVKHYSAIFNGME 654
                         599********************6.678*************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                          ++p ++ er+ +Ere++grei n+vaceg++r+er+e +++W++rl++aGF+ v+ ++   +++k++++++++d y v  ++g+++lg k
  Pp3c15_17620V3.2.p 655 LSFPIDDPERVILEREIFGREILNIVACEGQARVERQEPYRQWQNRLQRAGFTRVHPKQILLSKMKAMMATFHKD-YGVGVDDGWILLGIK 744
                         *************************************************************************77.*************** PP

                GRAS 364 drpLvsvSaW 373
                         ++ + + S+W
  Pp3c15_17620V3.2.p 745 NQVVRANSFW 754
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.614360736IPR005202Transcription factor GRAS
PfamPF035148.5E-101387754IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MTEKGKTGGS LTPGRENSSS SLESLLQQAL LQSQRPKLQR RSLSAPVVDV SAEKRGRSLS  60
PHRASHVDGL RGSYFHKSRL EVSSSNFLER FAPPKLETIS KKTDVPWSSS SGVLGSGRAA  120
LGVNYYASQD SRSSTFSTGD SLSSDTQPSA TEGIFDAVHF EGNSSGSGDL AGQTESMTRF  180
IDDILSNEDL DEEKSLMQQS GAFHAMVKEI AGVLAPDSGV DGIDDPVVVE ADYLNDWAYA  240
AFFSTDELRM AEKSRSCQAM AREIAGVLSP EANIPDIGEV EGFNDQNNNI SEFIPTEDNT  300
TMKLMEGYTC MLSKHITDVS GARNSDNVDY RSFITESDSL MVHFDDVFRY HLDNSNRKPT  360
MKSDFDFNPL LRGLGGSNSS PPCATLTELL YRCAFAVSQG KTHSATEYLA ELRSLSSPFG  420
DYMQRVAHYF MEALVAKMSG TGEQLYTVIT NNHPSAATML KAFRQYVDRC PYIKVGHFFE  480
TKMTLDAFEG ATRVHIIHYG IQYGVEWPTL IQHLSKRPEG PPHFRITGVD VPYPGEDPCW  540
KIEQTGRRLA EFAKMWNVPF EFHALAGKWE SFTARDFNLR SDEVLAVITH RLHNILDVSV  600
LGASPRELLL RRIRSLNPKV FFMFVDNAAC NGPFFMTRFR ESVKHYSAIF NGMELSFPID  660
DPERVILERE IFGREILNIV ACEGQARVER QEPYRQWQNR LQRAGFTRVH PKQILLSKMK  720
AMMATFHKDY GVGVDDGWIL LGIKNQVVRA NSFWEPKPVM SFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4939275725381Protein SCARECROW
5b3h_A2e-4939275724380Protein SCARECROW
5b3h_D2e-4939275724380Protein SCARECROW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.136110.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397052.10.0scarecrow-like protein 11
TrEMBLA0A2K1JDJ30.0A0A2K1JDJ3_PHYPA; Uncharacterized protein
STRINGPP1S359_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-99SCARECROW-like 14