PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_17600V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 770aa MW: 85702.4 Da PI: 5.2248

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_17600V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.4	2e-102	396	765	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA avs+g+ ++a+ lL+ l++++sp+g+++qR+a+yf+eAL a+l+++++ely+ + + s + +++a +l+ e +P+l Pp3c15_17600V3.4.p 396 TELLYRCALAVSQGNVREATDLLSDLRQISSPNGNATQRMAHYFMEALVAKLSGTGEELYRVIINNGPS---AAIVFKAIRLYLENCPYLI 483 789*******************************************************999777666...67888999******* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 f+h+ + + I++ +eg+ rvH i ++i++G+ p+L+q L++Rpeg+p+lRiTg++sp++g +++etg+rLa fA++ gvpfe+ + Pp3c15_17600V3.4.p 484 FAHFFTVKSIVDVFEGAARVHLICYGIQYGVELPSLIQYLSQRPEGAPHLRITGIDSPHPGnnPCLKINETGRRLAMFAKKWGVPFEYVA- 573 ******************************************************99977788999*****************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a ++e+++ ++++++++E+laV+++ +lh+l+desv +s+r+ v + ++s++Pk++v+v hn++ F++rf e++++ysa+++ l+ Pp3c15_17600V3.4.p 574 LAGSWESFTARDMNLREDEVLAVSSQDSLHTLPDESVMATSPRELVFRRIRSMNPKLFVMVGMHGGHNAPFFMTRFRESVKHYSAIYEGLD 664 599************************************************************************************ PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 ++pr++ +r+ vEre++g +i n+vaceg++r+er e +++W++r+++aGF+++p+ +++ +++k+++ +++d y v ++g++++g + Pp3c15_17600V3.4.p 665 ISMPRDDPDRVIVEREIFGSQILNIVACEGQARVERAEPYRQWQNRFQRAGFTQLPILDTVFNKMKAMMGAFHKD-YGVGRDDGWFLMGIR 754 *********************************************************************77.*********** PP GRAS 364 drpLvsvSaWr 374 ++ + ++SaW+ Pp3c15_17600V3.4.p 755 NQIVKFCSAWE 765 ********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.338	369	746	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-100	396	765	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MVGTRRVEGS SQATHTEISP LESLLQRAWL QTHKSKGSRR LSSAPLPDVA DEKRGFSRIA 60 SLPAFSGTRF PRSDDQEESD KVYFHKSRLD ASTVLVSRFS LPELTSYSSK TYVPLSVSLV 120 QWTHSEPVAG HGLSQALKPL TKSSTESSET LSGQSRHSLG ATESEVSSTS SVDFERQAQP 180 MASFLGGILT DENLEEENLH ETRAYQAIAK EIADLIGLNS SVETETSDIV DYESCWADAE 240 PYRTEAEMHI LEQSGAYQAM VKEIAELISP HPAVIDTDET DLSDGKASDS ADFRPTEELA 300 ARGMMEAYSH ILTRHLEDVA INSDSDAAST IKYRTTETDT IVTYFNEDWK LYLQNLNQNF 360 TPTSNFDFNL LLCGAVEGSK VSADNAVPSS SSGSLTELLY RCALAVSQGN VREATDLLSD 420 LRQISSPNGN ATQRMAHYFM EALVAKLSGT GEELYRVIIN NGPSAAIVFK AIRLYLENCP 480 YLIFAHFFTV KSIVDVFEGA ARVHLICYGI QYGVELPSLI QYLSQRPEGA PHLRITGIDS 540 PHPGNNPCLK INETGRRLAM FAKKWGVPFE YVALAGSWES FTARDMNLRE DEVLAVSSQD 600 SLHTLPDESV MATSPRELVF RRIRSMNPKL FVMVGMHGGH NAPFFMTRFR ESVKHYSAIY 660 EGLDISMPRD DPDRVIVERE IFGSQILNIV ACEGQARVER AEPYRQWQNR FQRAGFTQLP 720 ILDTVFNKMK AMMGAFHKDY GVGRDDGWFL MGIRNQIVKF CSAWEPKCP*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MVGTRRVEGS SQATHTEISP LESLLQRAWL QTHKSKGSRR LSSAPLPDVA DEKRGFSRIA  60
SLPAFSGTRF PRSDDQEESD KVYFHKSRLD ASTVLVSRFS LPELTSYSSK TYVPLSVSLV  120
QWTHSEPVAG HGLSQALKPL TKSSTESSET LSGQSRHSLG ATESEVSSTS SVDFERQAQP  180
MASFLGGILT DENLEEENLH ETRAYQAIAK EIADLIGLNS SVETETSDIV DYESCWADAE  240
PYRTEAEMHI LEQSGAYQAM VKEIAELISP HPAVIDTDET DLSDGKASDS ADFRPTEELA  300
ARGMMEAYSH ILTRHLEDVA INSDSDAAST IKYRTTETDT IVTYFNEDWK LYLQNLNQNF  360
TPTSNFDFNL LLCGAVEGSK VSADNAVPSS SSGSLTELLY RCALAVSQGN VREATDLLSD  420
LRQISSPNGN ATQRMAHYFM EALVAKLSGT GEELYRVIIN NGPSAAIVFK AIRLYLENCP  480
YLIFAHFFTV KSIVDVFEGA ARVHLICYGI QYGVELPSLI QYLSQRPEGA PHLRITGIDS  540
PHPGNNPCLK INETGRRLAM FAKKWGVPFE YVALAGSWES FTARDMNLRE DEVLAVSSQD  600
SLHTLPDESV MATSPRELVF RRIRSMNPKL FVMVGMHGGH NAPFFMTRFR ESVKHYSAIY  660
EGLDISMPRD DPDRVIVERE IFGSQILNIV ACEGQARVER AEPYRQWQNR FQRAGFTQLP  720
ILDTVFNKMK AMMGAFHKDY GVGRDDGWFL MGIRNQIVKF CSAWEPKCP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-45	401	767	25	381	Protein SCARECROW
5b3h_A	3e-45	401	767	24	380	Protein SCARECROW
5b3h_D	3e-45	401	767	24	380	Protein SCARECROW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397051.1	0.0	scarecrow-like transcription factor PAT1
TrEMBL	A0A2K1JDI6	0.0	A0A2K1JDI6_PHYPA; Uncharacterized protein
STRING	PP1S359_32V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-100	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Pp3c15_17600V3.4.p