PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_13960V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 531aa MW: 57136.6 Da PI: 7.6623 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.2e-30 | 340 | 393 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Pp3c15_13960V3.2.p 340 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 393 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.43E-19 | 337 | 397 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.927 | 337 | 396 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-30 | 339 | 398 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 341 | 393 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-7 | 343 | 392 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MAEGWGGRWR SVPSQPLVAL GSTCGFGEEI RCTRSQEWVR GRRICGFMHA CERRRVVDMT 60 MKDGDHVVEW NPGLPTGEEL NPTSKSLISL VLASGLSMKP EPLKTAADVS GESRASFLDS 120 QVQRFSPMSF EALPLFKERK DAGSFVCASE VRDDGGGRGD GHVGGRGGSI ATGEGRSDAR 180 GEVRGETRGA EEPEIEAEVE VGLGLGLGSG GGGRDNDRAT VAEKQNCCSH SASYSHGHGG 240 HPMPTVFRGG SDGTSHQPSE GRSEHSSGLP FMMNGLPAYG SPYERRPDSS SYGGRGDDSS 300 KGGGCAKNAR KLADSDFEDT DSGGGPVNSN EETNARTLKR PRLVWTPQLH KRFVDAVGHL 360 GIKNAVPKTI MQLMNVEGLT RENVASHLQK YRLYLKRMQG LSSDGPPAND QLFSSTPLPP 420 NLGLHYMANQ REDVGGPSFP PATVPPMPYK GVGGGPLGPA HFSVYDRMPY GVVNRGFLQR 480 PPMKDRTEHI SESENGNHQS VLSQNHHSYM EKRANSPEKR LLSLFPTSSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-33 | 340 | 396 | 1 | 57 | Transcription factor LUX |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397412.1 | 0.0 | uncharacterized protein LOC112292811 isoform X1 | ||||
TrEMBL | A0A2K1JD37 | 0.0 | A0A2K1JD37_PHYPA; Uncharacterized protein | ||||
STRING | PP1S104_175V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 5e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_13960V3.2.p |