PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_13310V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HB-other

Protein Properties

Length: 304aa MW: 33938.9 Da PI: 7.1502

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_13310V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	5.2e-17	25	78	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 R + +++q+e+Le++++ ++yps+++r++L + l+L+++q ++WF rR+k+++ Pp3c15_13310V3.1.p 25 RKKKSASQTEVLERAYAVEKYPSEATRQKLVRDLDLSDKQLQIWFTHRRYKDRR 78 88899***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-17	3	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.84E-15	5	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.548	19	79	IPR001356	Homeobox domain
SMART	SM00389	5.8E-16	21	83	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-14	25	78	IPR001356	Homeobox domain
CDD	cd00086	3.90E-14	25	78	No hit	No description
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MASDGSSPHT SPAPSPPEKP KGISRKKKSA SQTEVLERAY AVEKYPSEAT RQKLVRDLDL 60 SDKQLQIWFT HRRYKDRRDG IDDEKLTFYA KNKTQDHMLN QECSSKKEEA QRVVEEESEP 120 DGYLAQVLAE ERDDDELIAE NEYTNGMDVA SNGGYRDSEK IMPGPKRRGG PRIPKDPNRP 180 PRRPGPKPKF NAMAAAERAA IMAVESQLCG PLREDGPPLG FEFDPLPPRA FTELPMTEVP 240 HTAGGSRDGG SENYSERTAL QSKWSKELEL AENKKRKIGW LPISGSQAQH LSVHKPSRGE 300 NGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	78	RRYKDRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.5028	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396791.1	0.0	homeobox-DDT domain protein RLT1-like isoform X2
TrEMBL	A0A2K1JD32	0.0	A0A2K1JD32_PHYPA; Uncharacterized protein
STRING	PP1S419_32V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	4e-16	homeobox-1

Link Out ? help Back to Top
Phytozome	Pp3c15_13310V3.1.p