PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_12700V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 1432aa MW: 157485 Da PI: 4.5433 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 1408 | 1431 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++Crf+a+ G+Ck+Gd C F Hg Pp3c15_12700V3.3.p 1408 KDVPCRFYAK-GYCKRGDACEFWHG 1431 6789******.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.2E-11 | 393 | 458 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.64E-9 | 408 | 465 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.582 | 411 | 477 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15568 | 2.91E-20 | 413 | 458 | No hit | No description |
SMART | SM00249 | 1.8E-7 | 413 | 459 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 414 | 474 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 1.1E-25 | 641 | 731 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 1.9E-21 | 651 | 729 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 2.0E-17 | 654 | 727 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 8.9E-5 | 660 | 732 | IPR019835 | SWIB domain |
PROSITE profile | PS51360 | 28.839 | 788 | 921 | IPR004343 | Plus-3 domain |
SMART | SM00719 | 1.0E-39 | 788 | 898 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 2.22E-30 | 789 | 919 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 9.4E-22 | 793 | 896 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.11E-15 | 1188 | 1251 | IPR003169 | GYF domain |
CDD | cd00072 | 7.83E-15 | 1198 | 1253 | No hit | No description |
PROSITE profile | PS50829 | 14.857 | 1198 | 1252 | IPR003169 | GYF domain |
SMART | SM00444 | 6.0E-16 | 1199 | 1254 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.8E-15 | 1200 | 1252 | IPR003169 | GYF domain |
Pfam | PF02213 | 5.1E-11 | 1201 | 1243 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 15.009 | 1406 | 1431 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 1407 | 1431 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-6 | 1408 | 1431 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 1410 | 1431 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010964 | Biological Process | regulation of chromatin silencing by small RNA | ||||
GO:0032776 | Biological Process | DNA methylation on cytosine | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042393 | Molecular Function | histone binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1432 aa Download sequence Send to blast |
MENGLQEFAE QMLATAVVGK DQDVVKVLTS VEVGDDLKDT TMTEVVEEKV GGGGGAEGGE 60 GEEEEDVYSM EVSDELEKRN EVVAKEAEST AVAVAPPELD KNDDFPKEED VTMSTINDEP 120 TSESGAATER GPAEIPFAEP AAGAAAAAAS EKEDVTDLNE TPKLELENES EEMRVNEASP 180 TPPTHDLVEA AEELEVPQES PAKSEAVKDE VVERVIRPAL DVNEPAEALK TVEGVHSDVA 240 PFRNVRAEEA KALHDAETKM VSAAACVANE AMESAHEDVR AAAQGEEEVA QVKLEPKDEG 300 QSSGQVDDIR SSQSQPNGGA DMAVDAKEGD AGVVPKAEKT ELEREMELYE ASEREEQVWL 360 LAPTRVEQQC EEPSKDVQND RKRALDMPTQ ERQRKQSRRT HAAEERKKDE EDVCFICFDG 420 GDLVMCDRRS CPKAYHLSCI GRDAAFFKKK GAWLCGWHFC SVCTKPGSFQ CYTCPTAYCG 480 SCIQEAEFLM LRKRKGLCED CLPIVSMIER NETTNADGVE VDFEDQDTYE CLFKEYWEDL 540 KRRLSLIMPE LDKDGKPVGG MGSMLNSGGS ETEDHSENEE SDRESDESEQ EHPEPVEAAR 600 KGRGKGKKDR MGSEKMEEDV DQEEGEEEGE GEGEEEEVQE QQEDRGDKFE SWASQELLGF 660 IEHMKEDPTK PLSRFAVNKL LWSYIKRHRL QDARKSSQIN CDERLRTIFG KETVGQFEMF 720 KHLQAHFPSR SSVDSKKSKD SGKGDEAATE DEALKNGEDV VGSAKERRRG RRAADEKFER 780 PSSSEYAAIT PKNISLIYLR RALLRDLLDD PEFDNKVVDT FVRIRVPGIS TKTETTYRLV 840 LVTGTRIGEE SYKAGTKTTN IVLEILNLQK KEDVTVDLVS NQDFTEEECQ RLRQSIKCGF 900 IKALTVGEVE EKALALQEAR VNDWFENERQ RLINLRDRAS EQGRKKELRE CVEKLQEMSS 960 PAFRAAKLQA RPEVSVDPHM EPGYESDVNE MSPLQVGGRM FRAKGAASSR WEKGGGSGGG 1020 GGGWDGLNVE ESSFYPGRKG DADGQRSKSS WEETSRSRGY GRGGYDAGRS GEKVGAGRES 1080 SYGVEAKTYG SDERDRRVWD KDWDREQTRE QERGRGDAYN WSSSGGRNGL DAWGGEVGEA 1140 KYGRGETRTG TTPVFGQPRT EWGSTRREAA STASVSSTPV GFGPATPSIQ NLAALEKEKL 1200 WHYQDPTGTV QGPFTMEQLR KWNTTGLFPV TLTIWKTGQS QAESMLLTDA LAGRWKEEIW 1260 GGGAGGAGRS RSRELVGGGS PTPRANSAWS VMEGGLGASR GEVGAAVSST EWESRDAAER 1320 GGSWARVASS FGGVSSGSGR AVEEWSGARA RAEPESWGGS SRKGDGSSWG GSESGKSTYG 1380 RSNSSREYEG AAGREGSRSS RGPRGSKKDV PCRFYAKGYC KRGDACEFWH G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 2e-16 | 405 | 479 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396631.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396632.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396633.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396634.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396635.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396636.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396637.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
TrEMBL | A0A2K1JCZ0 | 0.0 | A0A2K1JCZ0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S258_72V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 6e-71 | nucleic acid binding;zinc ion binding;DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_12700V3.3.p |