PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12700V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1432aa    MW: 157485 Da    PI: 4.5433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12700V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-0814081431226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          k ++Crf+a+ G+Ck+Gd C F Hg
  Pp3c15_12700V3.2.p 1408 KDVPCRFYAK-GYCKRGDACEFWHG 1431
                          6789******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.2E-11393458IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.64E-9408465IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.582411477IPR019787Zinc finger, PHD-finger
CDDcd155682.91E-20413458No hitNo description
SMARTSM002491.8E-7413459IPR001965Zinc finger, PHD-type
PROSITE patternPS013590414474IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.101.1E-25641731IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.9E-21651729IPR003121SWIB/MDM2 domain
PfamPF022012.0E-17654727IPR003121SWIB/MDM2 domain
SMARTSM001518.9E-5660732IPR019835SWIB domain
PROSITE profilePS5136028.839788921IPR004343Plus-3 domain
SMARTSM007191.0E-39788898IPR004343Plus-3 domain
SuperFamilySSF1590422.22E-30789919IPR004343Plus-3 domain
PfamPF031269.4E-22793896IPR004343Plus-3 domain
SuperFamilySSF552771.11E-1511881251IPR003169GYF domain
CDDcd000727.83E-1511981253No hitNo description
PROSITE profilePS5082914.85711981252IPR003169GYF domain
SMARTSM004446.0E-1611991254IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.8E-1512001252IPR003169GYF domain
PfamPF022135.1E-1112011243IPR003169GYF domain
PROSITE profilePS5010315.00914061431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-614071431IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-614081431IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-414101431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MENGLQEFAE QMLATAVVGK DQDVVKVLTS VEVGDDLKDT TMTEVVEEKV GGGGGAEGGE  60
GEEEEDVYSM EVSDELEKRN EVVAKEAEST AVAVAPPELD KNDDFPKEED VTMSTINDEP  120
TSESGAATER GPAEIPFAEP AAGAAAAAAS EKEDVTDLNE TPKLELENES EEMRVNEASP  180
TPPTHDLVEA AEELEVPQES PAKSEAVKDE VVERVIRPAL DVNEPAEALK TVEGVHSDVA  240
PFRNVRAEEA KALHDAETKM VSAAACVANE AMESAHEDVR AAAQGEEEVA QVKLEPKDEG  300
QSSGQVDDIR SSQSQPNGGA DMAVDAKEGD AGVVPKAEKT ELEREMELYE ASEREEQVWL  360
LAPTRVEQQC EEPSKDVQND RKRALDMPTQ ERQRKQSRRT HAAEERKKDE EDVCFICFDG  420
GDLVMCDRRS CPKAYHLSCI GRDAAFFKKK GAWLCGWHFC SVCTKPGSFQ CYTCPTAYCG  480
SCIQEAEFLM LRKRKGLCED CLPIVSMIER NETTNADGVE VDFEDQDTYE CLFKEYWEDL  540
KRRLSLIMPE LDKDGKPVGG MGSMLNSGGS ETEDHSENEE SDRESDESEQ EHPEPVEAAR  600
KGRGKGKKDR MGSEKMEEDV DQEEGEEEGE GEGEEEEVQE QQEDRGDKFE SWASQELLGF  660
IEHMKEDPTK PLSRFAVNKL LWSYIKRHRL QDARKSSQIN CDERLRTIFG KETVGQFEMF  720
KHLQAHFPSR SSVDSKKSKD SGKGDEAATE DEALKNGEDV VGSAKERRRG RRAADEKFER  780
PSSSEYAAIT PKNISLIYLR RALLRDLLDD PEFDNKVVDT FVRIRVPGIS TKTETTYRLV  840
LVTGTRIGEE SYKAGTKTTN IVLEILNLQK KEDVTVDLVS NQDFTEEECQ RLRQSIKCGF  900
IKALTVGEVE EKALALQEAR VNDWFENERQ RLINLRDRAS EQGRKKELRE CVEKLQEMSS  960
PAFRAAKLQA RPEVSVDPHM EPGYESDVNE MSPLQVGGRM FRAKGAASSR WEKGGGSGGG  1020
GGGWDGLNVE ESSFYPGRKG DADGQRSKSS WEETSRSRGY GRGGYDAGRS GEKVGAGRES  1080
SYGVEAKTYG SDERDRRVWD KDWDREQTRE QERGRGDAYN WSSSGGRNGL DAWGGEVGEA  1140
KYGRGETRTG TTPVFGQPRT EWGSTRREAA STASVSSTPV GFGPATPSIQ NLAALEKEKL  1200
WHYQDPTGTV QGPFTMEQLR KWNTTGLFPV TLTIWKTGQS QAESMLLTDA LAGRWKEEIW  1260
GGGAGGAGRS RSRELVGGGS PTPRANSAWS VMEGGLGASR GEVGAAVSST EWESRDAAER  1320
GGSWARVASS FGGVSSGSGR AVEEWSGARA RAEPESWGGS SRKGDGSSWG GSESGKSTYG  1380
RSNSSREYEG AAGREGSRSS RGPRGSKKDV PCRFYAKGYC KRGDACEFWH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-16405479980Histone-lysine N-methyltransferase NSD3
4gnd_C2e-16405479980Histone-lysine N-methyltransferase NSD3
4gne_A2e-16405479980Histone-lysine N-methyltransferase NSD3
4gnf_A2e-16405479980Histone-lysine N-methyltransferase NSD3
4gng_A2e-16405479980Histone-lysine N-methyltransferase NSD3
4gng_D2e-16405479980Histone-lysine N-methyltransferase NSD3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396631.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396632.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396633.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396634.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396635.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396636.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396637.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2K1JCZ00.0A0A2K1JCZ0_PHYPA; Uncharacterized protein
STRINGPP1S258_72V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.16e-71nucleic acid binding;zinc ion binding;DNA binding