PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12580V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1123aa    MW: 122620 Da    PI: 4.5175
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12580V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-0810991122226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          k ++Crf+a+ G+Ck+Gd C F Hg
  Pp3c15_12580V3.1.p 1099 KDVPCRFYAK-GYCKRGDACEFWHG 1122
                          6789******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-10320389IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-11324389IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.582342408IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-7344390IPR001965Zinc finger, PHD-type
CDDcd155685.62E-20344389No hitNo description
PROSITE patternPS013590345405IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.107.0E-8572620IPR003121SWIB/MDM2 domain
SuperFamilySSF475929.16E-6582620IPR003121SWIB/MDM2 domain
SuperFamilySSF552778.24E-16879942IPR003169GYF domain
PROSITE profilePS5082914.857889943IPR003169GYF domain
CDDcd000725.69E-15889944No hitNo description
SMARTSM004446.0E-16890945IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-15891943IPR003169GYF domain
PfamPF022133.8E-11892934IPR003169GYF domain
PROSITE profilePS5010315.00910971122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-610981122IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-610991122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-411011122IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MEVSDELEKR NEVVAKEAES TAVAVAPPEL DKNDDSPKEE DVTMSTINDE PTSESGAATE  60
RGPAEIPFAE PAAGAAAAAA SEKEDVTDLN ETPKLELENE SEEMRVNEAS PTPPTHDLVE  120
AAEELEVPQE SPAKSEAVKD EVVERVIRPA LDVNEPAEAL KTVEGVHSDV APFRNVRAEE  180
AKALHDAETK MVSAAACVAN EAMESAHEDV RAAAQGEEEV AQVKLEPKDE GQSSGQVDDI  240
RSSQSQPNGG ADMAVDAKEG DAGVVPKAEK TELEREMELY EASEREEQVW LLAPTRVEQQ  300
CEEPSKDVQN DRKRALDMPT QERQRKQSRR THAAEERKKD EEDVCFICFD GGDLVMCDRR  360
SCPKAYHLSC IGRDAAFFKK KGAWLCGWHF CSVCTKPGSF QCYTCPTAYC GSCIQEAEFL  420
MLRKRKGLCE DCLPIVSMIE RNETTNADGV EVDFEDQDTY ECLFKEYWED LKRRLSLIMP  480
ELDKDGKPVG GMGSMLNSGG SETEDHSENE ESDRESDESE QEHPEPVEAA RKGRGKGKKD  540
RMGSEKMEED VDQEEGEEEG EGEGEEEEVQ EQQEDRGDKF ESWASQELLG FIEHMKEDPT  600
KPLSRFAVNK LLWSYIKRHS VGVAWRCGQR CLNLMGVTLR ECVEKLQELS SPAFRAAKLQ  660
ARPEVSADPH MDPGYESDVN EMSPLQVGGR MFRAKGAASS RWEKGGGSGG GGGGWDGLNV  720
EESSFYPGRK GDADGQRSKS SWEETSRSRG YGRGGYDAGR SGEKVGAGRE SSYGVEAKTY  780
GSDERDRRVW DKDWDREQTR EQERGRGDAY NWSSSGGRNG LDAWGGEVGE AKYGRGETRT  840
GTTPVFGQPR TEWGSTRREA ASTASVSSTP VGFGPATPSI QNLAALEKEK LWHYQDPTGT  900
VQGPFTMEQL RKWNTTGLFP VTLTIWKTGQ SQAESMLLTD ALAGRWKEEI WGGGAGGAGR  960
SRSRELVGGG SPTPRANSAW SVMEGGLGAS RGEVGAAVSS TEWESRDAAE RGGSWARVAS  1020
SFGGVSSGSG RAVEEWSGAR ARAEPESWGG PSRKGDGSSW GGSESGKSTY GRSNSSREYE  1080
GAAGREGSRS SRGPRGSKKD VPCRFYAKGY CKRGDACEFW HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-13336410980Histone-lysine N-methyltransferase NSD3
4gnd_C4e-13336410980Histone-lysine N-methyltransferase NSD3
4gne_A4e-13336410980Histone-lysine N-methyltransferase NSD3
4gnf_A4e-13336410980Histone-lysine N-methyltransferase NSD3
4gng_A4e-13336410980Histone-lysine N-methyltransferase NSD3
4gng_D4e-13336410980Histone-lysine N-methyltransferase NSD3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396035.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2K1JCY80.0A0A2K1JCY8_PHYPA; Uncharacterized protein
STRINGPP1S258_72V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.18e-50nucleic acid binding;zinc ion binding;DNA binding