PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_12420V3.3.p | ||||||||
Common Name | PHYPADRAFT_170746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 250aa MW: 27421.6 Da PI: 4.4924 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 41.6 | 2.1e-13 | 52 | 164 | 49 | 163 |
FLO_LFY 49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127 +l+ +f ++G+r tv ki+e+Gft++tL+ d el l++s+ + + l +Ge +Gik a a++ +l++ e Pp3c15_12420V3.3.p 52 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 133 4799**************************98654.7888888888754..3668********9..667777775555443333331.... PP FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163 sed+ + + + s+e+++ ep ++ +++++ Pp3c15_12420V3.3.p 134 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 164 ......4444443333313444444554443333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.5E-7 | 53 | 114 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLASLDLSQS WQEGVNGFSE TLLSGAGVFD CLNSSAKVIG VPWKDGIIMA SIDLDTFFDG 60 FGLRPETVFK IKEMGFTAKT LMSNVDELPS LLESINQHHL LTLGEEWGIK GAAKKWQLDQ 120 TYAPHPEDEK WPESEDTCKE VACIDSEEVT QLEPCSKWMQ QQQQGQQLPS SHNHLGPSNL 180 TGSNLSPSNQ GVSDVGPGGS PGRVGYYTNL LSYQSQGNAR FDIMREVDVT SQRQPQIKHS 240 FDHVVGTTF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396205.1 | 1e-151 | uncharacterized protein LOC112292190 | ||||
TrEMBL | A9TLG9 | 1e-160 | A9TLG9_PHYPA; Predicted protein | ||||
STRING | PP1S258_46V6.1 | 1e-134 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_12420V3.3.p |
Entrez Gene | 5942673 |
Publications ? help Back to Top | |||
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