PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c15_11920V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 343aa MW: 37439.9 Da PI: 6.8845 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36 | 1.5e-11 | 49 | 89 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k+ rr+++NReAAr+sR+RKka++++Le +L + ++ Pp3c15_11920V3.5.p 49 SKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQE 89 7999*************************865555444443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.4E-6 | 46 | 111 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.1E-9 | 46 | 93 | No hit | No description |
PROSITE profile | PS50217 | 9.163 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.5E-8 | 50 | 90 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.21E-23 | 50 | 102 | No hit | No description |
SuperFamily | SSF57959 | 3.06E-7 | 50 | 94 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.1E-33 | 142 | 217 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MGDNSASART DSSSDMDGDA KLDDGQHLAS GGGNSNDSSL ETGTKNGDSK VLRRLAQNRE 60 AARKSRLRKK AYVQQLESSR IKLNQLEQEL QRTRQQGLYL GPGSYSDQNG QSGGVGGANA 120 YSSGAAAFDL EYARWVEDHT RQMSELRVAL QAHVADADLR LLVDGSMAHY DDLFRLKDAA 180 AKADVFHLVS GMWKTPAERC FVWIGGCRPS ELLKILVPQI EPLTEQQLLN ICNLQQSSQQ 240 GEEALSQGME QLQQSLAETL SAGSLGSAAN VANYMGQMAV AMGQLGNLEG FVRQADHLRQ 300 QTLQQMHRVL TIRQVARGLL AMGDYFARLR ALSSLWSARP RE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.10489 | 0.0 | protonema |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397444.1 | 0.0 | transcription factor TGA2.2-like | ||||
Swissprot | O24160 | 1e-149 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A2K1JCW2 | 0.0 | A0A2K1JCW2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S258_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-125 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c15_11920V3.5.p |