PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_11920V3.20.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 364aa    MW: 39831.8 Da    PI: 8.5877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_11920V3.20.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.97e-1168108444
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                          +k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Pp3c15_11920V3.20.p  68 SKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQE 108
                          7999*************************865555544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.002565118IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-865113No hitNo description
PROSITE profilePS502179.16367111IPR004827Basic-leucine zipper domain
CDDcd147084.87E-2169122No hitNo description
SuperFamilySSF579593.5E-769113No hitNo description
PfamPF001701.0E-769109IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
PfamPF141442.4E-33163238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEKSGKVQRY SRKVCGIIKM GDNSASARTD SSSDMDGDAK LDDGQHLASG GGNSNDSSLE  60
TGTKNGDSKV LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLNQLEQELQ RTRQQQGLYL  120
GPGSYSDQNG QSGGVGGANA YSSAGAAAFD LEYARWVEDH TRQMSELRVA LQAHVADADL  180
RLLVDGSMAH YDDLFRLKDA AAKADVFHLV SGMWKTPAER CFVWIGGCRP SELLKILVPQ  240
IEPLTEQQLL NICNLQQSSQ QGEEALSQGM EQLQQSLAET LSAGSLGSAA NVANYMGQMA  300
VAMGQLGNLE GFVRQADHLR QQTLQQMHRV LTIRQVARGL LAMGDYFARL RALSSLWSAR  360
PRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.104890.0protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397444.10.0transcription factor TGA2.2-like
SwissprotO241601e-147TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2K1JCW20.0A0A2K1JCW2_PHYPA; Uncharacterized protein
STRINGPP1S258_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-124TGACG motif-binding factor 6