PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_11920V3.18.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 362aa    MW: 39604.5 Da    PI: 8.5877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_11920V3.18.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.97e-1166106444
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                          +k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Pp3c15_11920V3.18.p  66 SKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQE 106
                          7999*************************865555544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.002563116IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-863111No hitNo description
PROSITE profilePS502179.16365109IPR004827Basic-leucine zipper domain
CDDcd147083.90E-2167120No hitNo description
SuperFamilySSF579593.44E-767111No hitNo description
PfamPF001701.0E-767107IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
PfamPF141442.3E-33161236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEKSGKRYSR KVCGIIKMGD NSASARTDSS SDMDGDAKLD DGQHLASGGG NSNDSSLETG  60
TKNGDSKVLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL NQLEQELQRT RQQQGLYLGP  120
GSYSDQNGQS GGVGGANAYS SAGAAAFDLE YARWVEDHTR QMSELRVALQ AHVADADLRL  180
LVDGSMAHYD DLFRLKDAAA KADVFHLVSG MWKTPAERCF VWIGGCRPSE LLKILVPQIE  240
PLTEQQLLNI CNLQQSSQQG EEALSQGMEQ LQQSLAETLS AGSLGSAANV ANYMGQMAVA  300
MGQLGNLEGF VRQADHLRQQ TLQQMHRVLT IRQVARGLLA MGDYFARLRA LSSLWSARPR  360
E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.104890.0protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397444.10.0transcription factor TGA2.2-like
SwissprotO241601e-147TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2K1JCW20.0A0A2K1JCW2_PHYPA; Uncharacterized protein
STRINGPP1S258_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-124TGACG motif-binding factor 6